| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2652 |
|---|
| Symbol | |
|---|
| ID | 5612597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3206412 |
|---|
| End bp | 3207527 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640933571 |
|---|
| Product | ATP-binding Mrp/Nbp35 family protein |
|---|
| Protein accession | YP_001474387 |
|---|
| Protein GI | 157375787 |
|---|
| COG category | [D] Cell cycle control, cell division, chromosome partitioning |
|---|
| COG ID | [COG0489] ATPases involved in chromosome partitioning |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.240141 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCTTCAG CTTCTCAGAA TTACCGTCTC ACCGACGATC TTCTCGGGCC TGTTTTGGCC
ATTTTGGATG CATATCAAGA TCCGTATTTA GCACAAGGTT TGGTCAGCGC CGGCTGCGTA
AACAAGTTAT CGATGGATGG TAAACGTTTG CAGTTGGGTC TGTGTTACCC ATATCCATGC
ATGACACAGT ACCGTGATAC CGTTATGGCG ATAACGAAAA AGCTTGCTGT GCTAGATGCA
ATCGATGAAG TGGAATGCGA AATCGACTTC CAACCTGCGT CTATTTCAGC CATTGGTGGT
GTTGAGCCGA TTGAGAATGT GAAGCAAGTG ATTGCCGTCG CTTCCGGTAA AGGTGGTGTG
GGTAAATCAA CGACCGCGGT CAACCTGGCA TTAGCCCTTG CAGCCGAAGG CGCTAAAGTG
GGCATCCTGG ATGCCGACAT CTATGGTCCC TCTATTCCGT TAATGTTGGG TGTGACTGAT
TTTAAGCCAG TCTCGCCTGA TGGAAAAATG ATGACGGCAG CGACAGCCCA TGGCATTACG
GCACAATCTA TCGGTTTTAT GCTAGCCGAT GATGAAGCCG CGGTATGGCG TGGCCCTATG
GCTGCAGGTG CATTAGCCCA GTTGTTGAAT GAAACTCAAT GGCCGGAGCT CGATTACATG
GTTATCGATA TGCCACCGGG GACGGGTGAC ATTCAACTGA CCCTCTCTCA AAAAGTGCCG
GTGACAGGTG CAGTGGTGGT GACAACGCCT CAAGATATCG CCCTTGCCGA TGCCAAGAAA
GGGATCAGCA TGTTCCGCAA AGTGAACATT CCTGTGTTAG GCATTGTTGA GAATATGAGT
TTTCACATGT GTAGCGAATG TGGTCATAAA GAGCATCCGT TTGGTAGTCA CGGTGGCAGT
AAGATGGCCG AGCGTTATCA GGTTCCTCTT TTGGGAGAGT TACCGCTTAA GCTCAACATC
CGTGAAGATG TAGATAACGG CACACCTACG GTCGTAGCCG ACCCTGACGG TGAAGTGGCA
GCACTTTATC GTGAGATAGC AAGAAAAGTG GGAGCTCAGC TCGCACTCAC CAAAGTACAA
TCCAGTGTTT CAATTAGTAT TTCAGATGAC GAATAA
|
|---|
| Protein sequence | MSSASQNYRL TDDLLGPVLA ILDAYQDPYL AQGLVSAGCV NKLSMDGKRL QLGLCYPYPC
MTQYRDTVMA ITKKLAVLDA IDEVECEIDF QPASISAIGG VEPIENVKQV IAVASGKGGV
GKSTTAVNLA LALAAEGAKV GILDADIYGP SIPLMLGVTD FKPVSPDGKM MTAATAHGIT
AQSIGFMLAD DEAAVWRGPM AAGALAQLLN ETQWPELDYM VIDMPPGTGD IQLTLSQKVP
VTGAVVVTTP QDIALADAKK GISMFRKVNI PVLGIVENMS FHMCSECGHK EHPFGSHGGS
KMAERYQVPL LGELPLKLNI REDVDNGTPT VVADPDGEVA ALYREIARKV GAQLALTKVQ
SSVSISISDD E
|
|---|
| |