| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2643 |
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| Symbol | |
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| ID | 5612878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3197825 |
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| End bp | 3199051 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933562 |
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| Product | nucleoside recognition domain-containing protein |
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| Protein accession | YP_001474378 |
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| Protein GI | 157375778 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2715] Uncharacterized membrane protein, required for spore maturation in B.subtilis. |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0603186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTAAATC GGATTTGGTT TTTTTTCTTT ATGACGGCCA TGCTGGCTAT TGGCGTCCAA
CTCTTTAATG GTCAGCTGGA TGTACTATCT GCGTCAGTGA CCGCACTATT TGATAGTTCG
AAACTTGCTG CCGAAATAGC TCTGGGATTA ATTGGTGTAC TCTCTTTGTG GATGGGTCTG
ATGCGAGTCG GCGAGAAAGC CGGCGTCGTC GGTTTTTTCG CTAAAATTTT TGAACCGCTT
TTGTCCAGAT TAATGCCTGA GGTGCCCAAA GGACACCCTG CGTATGGCAG TGTCACCATG
AACCTGACGG CCAATATTTT GGGCCTGGAT AATGCTGCAA CGCCTCTTGG CCTTAAAGCG
ATGCAAGACC TACAGACGCT GAATCCGCAA AAAAGTGTCG CAACCAATGC GCAGATCCTT
TTTTTAGTAC TCAATACTTC GTCGGTGACC TTAGTGCCGG TCACCGTCTT TCTGTATCGT
GCGCAGCAGG GAGCTGCTGC GCCGGCGGAT ATTTTTCTTC CCATACTCCT GGCAACCTCT
GCTTCAACCA TTGCCGGGGT GTTGGTGGTT GCGATGTTTC AGCGTTTGTC TTTGTTAAAT
AGCGTTATCT TGGGCTATGG CGCGTTAATT TTCGGCTCAA TAATGGCGTT GGTCTTCTAT
TTGGGGACAC TAACCACGAC GGCGATAGGC ACGCTATCTA CCGCGATGGG CAACGGTGTA
CTCCTGCTAT TAGTGTTTAG TTTTATTCTT GTCGCCGGAC TGCGAAAGGT TGCAGTTTAT
GATGAGTTTA TAGTCGGCGC TAAAGAGGGG TTTTCACAGT CAATAAAGCT TATCCCTTAT
CTGCTTGCCA TGCTGCTGGC GATTGCCATG CTCAGGGCAT CTGGCGCCTT AGATTATTTG
CTACACCTTA TTTCGGTGGT GGTCTCAGTA TTGGGGGGAG ATACTCGTTT TGTGGATGCC
CTGCCGACGG GAATAATGAA ACCATTTAGT GGATCAGGCG CCAGAGCCAT GATGTTAGAG
ACCATGGAGC ACCATGGTGT CGACTCGTTT GCGGGTCGTT TGGCTGCGAT ATTTCAGGGA
AGTACCGAGA CAACTTTCTA TGTATTGGCC GTGTACTTTG GTGCGGTGGG GATCCGCAAC
GGGCGTCATG CGCTGGTATG CGGCTTAACG GCCGATCTGG CGGGTATTCT TGCCGCTATT
TTTGTCTGCT ATCAATTCTA TGGTTAA
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| Protein sequence | MLNRIWFFFF MTAMLAIGVQ LFNGQLDVLS ASVTALFDSS KLAAEIALGL IGVLSLWMGL
MRVGEKAGVV GFFAKIFEPL LSRLMPEVPK GHPAYGSVTM NLTANILGLD NAATPLGLKA
MQDLQTLNPQ KSVATNAQIL FLVLNTSSVT LVPVTVFLYR AQQGAAAPAD IFLPILLATS
ASTIAGVLVV AMFQRLSLLN SVILGYGALI FGSIMALVFY LGTLTTTAIG TLSTAMGNGV
LLLLVFSFIL VAGLRKVAVY DEFIVGAKEG FSQSIKLIPY LLAMLLAIAM LRASGALDYL
LHLISVVVSV LGGDTRFVDA LPTGIMKPFS GSGARAMMLE TMEHHGVDSF AGRLAAIFQG
STETTFYVLA VYFGAVGIRN GRHALVCGLT ADLAGILAAI FVCYQFYG
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