| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2639 |
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| Symbol | |
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| ID | 5613096 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3194284 |
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| End bp | 3195129 |
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| Gene Length | 846 bp |
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| Protein Length | 281 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933558 |
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| Product | DNA ligase |
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| Protein accession | YP_001474374 |
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| Protein GI | 157375774 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00943925 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0523485 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATTATT CTCAAGCATG TCGGTTGTCC ATATTTCTTA TTCTCATCAT TTTTTCCATC
GGTCTCAGTG AAGCGCATGT CAACGATATT CAGCTGGCCG TCGAAAAGCG GGCAGAGGCG
CCGATCAGTG AGTACCTTGT TAGTGAAAAA CTCGACGGAG TGAGAGGGTA TTGGGATGGC
ACTCAACTGT TTACGCGTTC GGGAAGGCTG ATATCTGCGC CACAGTGGTT CACTCGTGGA
TTCCCCGATT ATGCACTCGA TGGCGAATTA TGGATGGGAA GAGGAACGTT TGAGCAGATT
TCGTCATTAA TAAGAAGTAA GCATCCCAAA CAGGAACGCT GGCGCGAGGT TAAGTTTATG
GTGTTTGACT TGCCATCGCA TAGCCAAGTG TTTACTGAGC GATATGCTAT AGCAAAAAAC
GAGTTAGCGA ACAATTCTAT CTATTTATCG GTTATAGAGC AGAAACGTTT CGACAGTGTA
CAAGCGCTCG ATACTTGGTT TAGTCGTGTC ATTGAGCAAG GTGGCGAGGG CTTGATGTTA
CACCACAATC AATCTCTGTA TCTTAGCGGC AGAAACAGAG ACGTGATAAA ACTTAAGCCA
CTTTATGATG CCGAGGCTCG CGTGGTCGCT CATCAAGAGG GGCAAGGTAA GTTTAATGGG
ATGTTGGGTG CTTTAGTGGT TGAAACCCCG AGTGGGATCC GTTTTAAACT CGGTACCGGG
TTTACCGTGA GTGAAAGGCG TCACCCTCCA AAGATCGGCT CTATAGTCAC TTATCAATAC
TCAGGATTAA CGCAAAAAGG TACCCCTAGG TTCGCCAGCT TTCTTCGGGT AAGATTTATG
GAGTGA
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| Protein sequence | MYYSQACRLS IFLILIIFSI GLSEAHVNDI QLAVEKRAEA PISEYLVSEK LDGVRGYWDG
TQLFTRSGRL ISAPQWFTRG FPDYALDGEL WMGRGTFEQI SSLIRSKHPK QERWREVKFM
VFDLPSHSQV FTERYAIAKN ELANNSIYLS VIEQKRFDSV QALDTWFSRV IEQGGEGLML
HHNQSLYLSG RNRDVIKLKP LYDAEARVVA HQEGQGKFNG MLGALVVETP SGIRFKLGTG
FTVSERRHPP KIGSIVTYQY SGLTQKGTPR FASFLRVRFM E
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