| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2634 |
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| Symbol | |
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| ID | 5613161 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3185535 |
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| End bp | 3189140 |
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| Gene Length | 3606 bp |
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| Protein Length | 1201 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933553 |
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| Product | ribonuclease |
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| Protein accession | YP_001474369 |
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| Protein GI | 157375769 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0740113 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00367459 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAACGGA TGTTAATTAA TGCAACTCAA TCTGAAGAGT TGCGCGTTGC CCTTGTTGAT
GGGCAACAAC TGTACGATCT TGATATTGAA AGTCCTGGTC ACGAACAGAA AAAAGCGAAC
ATTTACAAAG GTAAAATTAC CCGCGTAGAA CCCTCTCTCG AAGCTGCTTT TGTTGACTAT
GGTGCCGATC GTCACGGTTT CCTTCCATTA AAAGAGATTG CCAGAGAATA CTTTCCAAAA
GGATACTCTT TCCAAGGCCG CCCCAACATC AAAGAGGTGG TTAAAGAGGG TCAAGAGGTT
ATTGTTCAGA TTGATAAAGA AGAGCGAGGC AACAAAGGTG CCGCGTTAAC TACTTTTATC
AGCTTGGCGG GTTCTTACCT GGTTCTTATG CCAAATAACC CTCGTGCCGG TGGTATCTCC
CGTCGAATCG AAGGTGATGA GCGTACCGAA CTTAAAGCGG CTATGTCTGA ACTTGAAGTA
CCTCAAGGTA TGGGTTTAAT TGTCCGTACT GCAGGTGTAG GAAAAGATTC AGCCGAACTT
AAATGGGACC TAAAAGTACT CGAGCATCAT TGGACTGCGA TTAAAGAAGC GTCTGAAGGC
CGTCCGGCTC CTTTCCTGAT CCATCAGGAA AGTAACGTCA TCGTACGTGC GATTCGTGAC
TACCTTCGTC GTGATGTTGG TGAAGTACTT ATCGATCACC CGCGTATTTT TGAAGATGCC
AAACAGCATG TTGCTTTGGT ACGTCCAGAC TTTGTCGATC GCATCAAGCA ATATGATGCT
GAAGTGCCAC TATTCACTCA TTTCCAGATC GAAACACAGA TCGAATCGGC CTTCCAGCGT
GAAGTTCGTC TTCCTTCCGG TGGCTCGATT GTTATCGATC CTACTGAAGC CCTAACCTCT
ATCGATATCA ACTCTGCTCG AGCAACGAAA GGTGGTGACA TTGAAGAGAC TGCGCTGAAT
ACCAACTTAG AAGCGGCAGA TGAAGTTGCT CGCCAGCTAC GCCTGCGTGA TCTGGGTGGT
TTGGTTGTTA TCGATTTCAT CGATATGACA CCAGTGCGTC ATCAACGTGA AGTTGAAAAT
AGAATGCGTG ATGCAGTGCA TCATGACAGA GCTCGAGTTC AACTGGGTCG TATCTCTCGC
TTCGGACTCA TGGAGATGTC AAGACAGCGT CTACGTCCAT CTCTTGAAGA GTCAGCTGCT
CACCTGTGCC CTCGTTGCCA TGGTCAAGGT ACAATCCGTG GGACAGAGTC TTTAGCCCTT
TCTATTCTTC GTTTGATGGA AGAGGAAGCA ATTAAAGAGA ACACCTCTCA AATTGAAGCT
ACAGTTCCAG TTGACGTAGC CGCATTCCTG CTTAACGAAA AGCGTAAAGC CATTCGAATT
ACAGAGCAGC GTCATGATGT TGAAGTCTAT GTGATCCCAG ATCCTAACAT GACTACCCCT
GACTACCGTG TCGTGCGTCA TCGTAAAGAT GATCAGATCA GTGAGTCCAG CTATAAGCTA
TTAGACCAGC CCGAAGCAAA ACTTTACGAG CCTCGTAAAC TTGAACGTGC TGCACCACCT
CAACCTGCAC TGAAAGGTTT CTCAGCGCCG GTTAAGGAAG TTGAAAAACC TTCTAGTATC
AAAAAAGATG TCAAAACTGA GTCCAAAAAA GATGCTGAAC CCGGTTTAAT CTCTAAGCTA
TTCTCTGCCA TCAGCGCGCT ATTCAAGCCT GAAGAGAAAA AAGAGGAACC AAAAAAGAAA
CCTCAGTCGA ACCGCGACAG TCAGAACCGC AATAACCGTC GTAACACTCG TCGTAATGAC
AATCGACGTA ATCGTGATGA CAAAGATCAA GCGAGTGACA AAGGCGCACG CAATAGCCGC
AACAAGAGCG CGGATTCTGC CAAGTCTGAC AAGGTAGAGA AGCAAGTCAG AGGGAAAGAC
GAGCAAGCCA AGCGTCAATC TCGCAATGAC AGTAAATCTC GTCGTCCGGC TCAGGAAAGC
GATGCCGAAT CGAAAGAACA GCCTAAGCAA GAGGTTGCCA GAGAACGTCG TCAACGCCGT
AATATGCGTC GTAAGGTTCG CGTTGAGAAT GAGCAAGCTC AAGTTGAAGA GACCCAGGTT
TTAGCTGAGA CTCCGGTAAA AGCTGCGGTA AGTGAAGAGA AGACCACGCG TCCAAAGCGT
CAACCAAGAA AGTCAAATAA GCCAAAACCT CAACAGGAAG CGACACAAGA GGCTCAGGCT
GCAACTCAGG TTGAAGCCGA AGTATCTGAC ATATCGCTAA CCGAGACAGT TAAAACTGAG
ACTCTTGAAG CAAAAGTTGA AGCAAAGGTC GAGCAGACTG CGCCGGTAGC CGTTGATTCG
ATTCAAACGA CACCTGTGAC AGACGCCGAT CAGGTTGAAA TCTCTTCGTC AGAAGAAGTT
GAAGTTGAAG CCACTGATGA CAAAGAGCAG CGTGAGCCAC GTGAAGGTCA ACGTCGCAGC
CGTCGTAGCC CTCGCCATCT TCGCGCCGCT GGTCAACGTC GTCGTCGCGA TGAAGATACC
GAAGGCGAGT CTTCATCTGA TGCTGCTCCG GCATTCGTTT CAAATGAAAC TGAAGTAGAA
AATCAAGCCA ACGAGACTAA AGCCGCCTCT GTCGCTGTAT CTACTCCGGC TCAACCTGAA
ACACCTGAGA TTCCAGCTGA AGATACGCAA AAAGCTGACA CTGAAGTTAA GTCTGAAGCG
ACTAAACCTG AGTCAACTAA GCCAGAGGCT ACGGCATCCG TTGCAGCATC CGCTCCAGCA
AAGCCAGCCG TTCCTGCTAA AAAACAGGCA CCAGCTAAGC CGAAAACAGC GGTAAAATCT
GAAGCCATGG CTGCACCCGC AAAGCCTGCC GCTCCGGTTA AAGCTGAAGC ATCTGTTGCC
TCAGCGGCAC CTGCTAAACC AGCCACACCG GTGAAAGCTG AGACCCAGGT GAAAACTGAA
GCATCAGTTG CCGCAGCAGC GCCAGCTAAA CCAGCAGTAC AGGTGAAAGC AGAAGCCCCT
GTGAAAACTG AAGCATCAGT TGCCACAGCG GCGCCAGCTA AACCCGTCGC GCCAGCGAAA
GTTGAGGCTT CAGTAAAAGC AGAAGCCCCT GTGAAAGCTA AAGCATCTGT TGCTGCAGCT
GCACCTGCTA AGCCAGCCGC ACCAGTTAAA GCTGAAGCTC CTGTTGAAAC AGAAGTGCCA
GCTAAAGCCA AAGCGTCTGT AGCCGCTACA GCACCAGCTA AACCTGCCGC TCCAGTTGAA
ACAGAAGTGC CAGCTAAAAC CAAAGCATCT GTAGCCGCTG CAGCACCAGC TAAACCTGCC
GCTCCTGTAA AAGCAGAGAC TGTTGTTAAA GCTGAAGCTC CTGTTAAAGC TGAAGCGCCT
GTTGAAACGC AAGTATCGAC TCCGACAGAG ATAGCTCCAC AGATTCAAAA AGCTCCAAAA
GCAAAATCTG TAAGCTCAAG TCGATTCGGC ACTATGGTCA CCTCTGATAT GACTAAGCCT
GTTGTAGAAA ACCGAGAAAA TATTGCGACG CCTTCAGGGC GTCAATATGC CACCTCAGAA
TCTACTGCAC CTAGCGAAAA ATCCAGAACG GCCAATACAG CAAACTCGGA AATGGCTAAA
CCATAA
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| Protein sequence | MKRMLINATQ SEELRVALVD GQQLYDLDIE SPGHEQKKAN IYKGKITRVE PSLEAAFVDY
GADRHGFLPL KEIAREYFPK GYSFQGRPNI KEVVKEGQEV IVQIDKEERG NKGAALTTFI
SLAGSYLVLM PNNPRAGGIS RRIEGDERTE LKAAMSELEV PQGMGLIVRT AGVGKDSAEL
KWDLKVLEHH WTAIKEASEG RPAPFLIHQE SNVIVRAIRD YLRRDVGEVL IDHPRIFEDA
KQHVALVRPD FVDRIKQYDA EVPLFTHFQI ETQIESAFQR EVRLPSGGSI VIDPTEALTS
IDINSARATK GGDIEETALN TNLEAADEVA RQLRLRDLGG LVVIDFIDMT PVRHQREVEN
RMRDAVHHDR ARVQLGRISR FGLMEMSRQR LRPSLEESAA HLCPRCHGQG TIRGTESLAL
SILRLMEEEA IKENTSQIEA TVPVDVAAFL LNEKRKAIRI TEQRHDVEVY VIPDPNMTTP
DYRVVRHRKD DQISESSYKL LDQPEAKLYE PRKLERAAPP QPALKGFSAP VKEVEKPSSI
KKDVKTESKK DAEPGLISKL FSAISALFKP EEKKEEPKKK PQSNRDSQNR NNRRNTRRND
NRRNRDDKDQ ASDKGARNSR NKSADSAKSD KVEKQVRGKD EQAKRQSRND SKSRRPAQES
DAESKEQPKQ EVARERRQRR NMRRKVRVEN EQAQVEETQV LAETPVKAAV SEEKTTRPKR
QPRKSNKPKP QQEATQEAQA ATQVEAEVSD ISLTETVKTE TLEAKVEAKV EQTAPVAVDS
IQTTPVTDAD QVEISSSEEV EVEATDDKEQ REPREGQRRS RRSPRHLRAA GQRRRRDEDT
EGESSSDAAP AFVSNETEVE NQANETKAAS VAVSTPAQPE TPEIPAEDTQ KADTEVKSEA
TKPESTKPEA TASVAASAPA KPAVPAKKQA PAKPKTAVKS EAMAAPAKPA APVKAEASVA
SAAPAKPATP VKAETQVKTE ASVAAAAPAK PAVQVKAEAP VKTEASVATA APAKPVAPAK
VEASVKAEAP VKAKASVAAA APAKPAAPVK AEAPVETEVP AKAKASVAAT APAKPAAPVE
TEVPAKTKAS VAAAAPAKPA APVKAETVVK AEAPVKAEAP VETQVSTPTE IAPQIQKAPK
AKSVSSSRFG TMVTSDMTKP VVENRENIAT PSGRQYATSE STAPSEKSRT ANTANSEMAK
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