Gene Ssed_2629 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2629 
Symbol 
ID5613614 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3180242 
End bp3180766 
Gene Length525 bp 
Protein Length174 aa 
Translation table11 
GC content45% 
IMG OID640933548 
Producthypothetical protein 
Protein accessionYP_001474364 
Protein GI157375764 
COG category[R] General function prediction only 
COG ID[COG1399] Predicted metal-binding, possibly nucleic acid-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.83088e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.64508e-06 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAAACAG TAAAGATACC GGTTTCAATT GATCCAATAC GCGCTTCGGC GAGTCAGCTT 
TCTTATGAAG GTGTGGTTCC GCATAAGCAA TTAAAACGAT TAAATGAGTT AAGTGCCGGC
GACTGTTCCG ATGTGACAGT GTCGTTGGAA TGTGGCGTAG ATATACAGGG GATAGTCTAC
CTTAAAGGGA AGGCTGTGAC GGAGCTCACT CTGAATTGTC AACGTTGCAT GACGCTATTT
ACCACTGAGG TTACGGTCGA CTTCAACTTC AGTCCCTGTG GGAATGAAGC TGAAATCGAT
GAGCTCCCGG ATGCGTATGA CCCTATTGAG TGTAATGAAA TAGGCGAAGT TCGTCTGCAT
CAATTGATTG AAGATGAATT GATAGTCGCT ATGCCTTTAA TACCAATGCA TGCTAACGAA
AGTTGCAGGC AAGGTAGTCA AGACATAGTA GTAGGCGAGA TCGAACCCGC TCAACAGGAG
CGTCCAAATC CGTTTGCAGT GTTAGAAAAA CTGAAGAGCA AGTAA
 
Protein sequence
MQTVKIPVSI DPIRASASQL SYEGVVPHKQ LKRLNELSAG DCSDVTVSLE CGVDIQGIVY 
LKGKAVTELT LNCQRCMTLF TTEVTVDFNF SPCGNEAEID ELPDAYDPIE CNEIGEVRLH
QLIEDELIVA MPLIPMHANE SCRQGSQDIV VGEIEPAQQE RPNPFAVLEK LKSK