| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2615 |
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| Symbol | rrmA |
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| ID | 5610736 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3167782 |
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| End bp | 3168597 |
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| Gene Length | 816 bp |
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| Protein Length | 271 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933534 |
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| Product | 23S rRNA methyltransferase A |
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| Protein accession | YP_001474350 |
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| Protein GI | 157375750 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00654791 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGAAAT ATCGTTGTCC CCTATGTAAA CAAGCTTTGT TACTGAAAGA GAGAACCTGG
TATTGCCCTG ATAATCACAG GTTCGATTGT GCCAAAGAGG GTTATGTCAA CTTACTGCCT
GTACAGAAGA AACGCTCCAA AGATCCAGGC GATAATAAGG AGATGATGTT TGCTCGCCGA
GAGTTTCTCA ATAAAGGGCA CTACCAACTA CTCAGCGACC GAGTGAATGA ATTAGCCCTG
CAGCATGCTC ATGGAGCGAA GGCCGGATTA GATATCGGCT GTGGTGAAGG TTATTACAGT
CATCGTTTAT ATGATGCAAT GTCTGAAGAG ATGAATTTTT CGCTTCAAGG CCTGGATATT
TCTAAGTCTG CACTGAAATA CGCATCGAAA AGGTACTCAG ATATCAGCTT TTGTGTTGCA
AGCGCATTTG AAATGCCATT TGCGGATGAG AGTTTTGATC TGATGCTGCG TATCTATGCC
CCCTCCTTAG ATGAAGAGTT AAGGCGCGTG GCTAAAAAAG AGAGCATATT GATCACAGCC
TCTGCTGGGA AGAACCATCA TTTTGCGCTT AAAGAGCTGA TATATGAGAA GCCGACTCCC
CATATAACCG AGAGCAGCAA GATAGCTGGT TTTGAGTTGC TTCACCGGGA AAATTTGGAG
TCGACTCTGG TACTCAGTGA AGGAATTGAG ATCACTCATT TTCTTAACAT GACACCTTAT
AGCTGGAAGT TGACCGACGA ACAGAAAGCA AAATTGGTAA AAAATGGGCT TAAATGCGAG
TTAGATTTCA AAATTGAGGT TTTTAAAGCC ATTTAA
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| Protein sequence | MMKYRCPLCK QALLLKERTW YCPDNHRFDC AKEGYVNLLP VQKKRSKDPG DNKEMMFARR
EFLNKGHYQL LSDRVNELAL QHAHGAKAGL DIGCGEGYYS HRLYDAMSEE MNFSLQGLDI
SKSALKYASK RYSDISFCVA SAFEMPFADE SFDLMLRIYA PSLDEELRRV AKKESILITA
SAGKNHHFAL KELIYEKPTP HITESSKIAG FELLHRENLE STLVLSEGIE ITHFLNMTPY
SWKLTDEQKA KLVKNGLKCE LDFKIEVFKA I
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