| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2613 |
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| Symbol | |
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| ID | 5610949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3165946 |
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| End bp | 3166845 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933532 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001474348 |
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| Protein GI | 157375748 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0139514 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCTGA TAAAATGTGA GATGCTGACT AAGTCCTATG GCAGTAAACT CGCGCTCGAC
AGAGTCTCAA TTGAGCTGAA GGCTGGGTCA CCTATAGCGC TTGTAGGGCC CAATGGCGCA
GGTAAAACCA CCCTATTTAG CTTACTGTGT GGCTATTTAA TACCGAGCAG TGGTTCGGTG
ACAATCATGG GAGAGAAGCC AGGCAGTCGC AAGCTGCTTG GTAAAGTAGC ATCACTACCA
CAAGATGCGA CTCTGGACCC TAACCTGAAT CTAATCACTC AATTCACTCT GTTTGGTACT
CTGCAAGGGT TAACGGCTAA ACAAGCAAAA GCTGAGAGCC TGCGCGTATT GTCCTTAGTC
GACCTTGCTC ATGTTGTGGA GCAAAAACCA CAATCGCTGA GTCATGGTAT GAGTAAACGA
GCATCCATTG CCCAGGCTCT GATTGGTTCG CCTCAGCTGG TCTTATTGGA TGAACCAACG
GCGGGTCTGG ATCCGGCAAA TGCGAAGGTG ATACGTGAGT TAGTCAGAGG CTTGTCATCC
GATATCACTT TCGTGATCAG CTCTCACAAC CTGGATGAAC TTGAAAAATT GTGCGATCAG
GTACTCTATC TCGACCAGGG TAAGCTTGGC CAGTCTGTCT CAATACAGGA AAACATGACA
GATGAGTACC TCACGGTTTC GATGCAAGAG TGCGACGATG AGCTCTTCGT CTCGGTACTC
GAGAGCCTAA CCGGTATAAA CAGTGTCACT AAGAAGCAAG AAAATGAATA TTTAATCCAT
TATTCTGCCG AAGAGATCCA TGATATCGAA GTTCAGTTCT TTACTCTTTT ATCGAAAAAC
GGTTGGAAAT ACCGGGCATT GCTGAAAGGC AGAACCCTTG AAGATAAACT TTTTTCATAG
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| Protein sequence | MSLIKCEMLT KSYGSKLALD RVSIELKAGS PIALVGPNGA GKTTLFSLLC GYLIPSSGSV
TIMGEKPGSR KLLGKVASLP QDATLDPNLN LITQFTLFGT LQGLTAKQAK AESLRVLSLV
DLAHVVEQKP QSLSHGMSKR ASIAQALIGS PQLVLLDEPT AGLDPANAKV IRELVRGLSS
DITFVISSHN LDELEKLCDQ VLYLDQGKLG QSVSIQENMT DEYLTVSMQE CDDELFVSVL
ESLTGINSVT KKQENEYLIH YSAEEIHDIE VQFFTLLSKN GWKYRALLKG RTLEDKLFS
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