| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2609 |
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| Symbol | |
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| ID | 5610937 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3160941 |
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| End bp | 3162854 |
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| Gene Length | 1914 bp |
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| Protein Length | 637 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933528 |
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| Product | arginine decarboxylase |
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| Protein accession | YP_001474344 |
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| Protein GI | 157375744 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1166] Arginine decarboxylase (spermidine biosynthesis) |
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| TIGRFAM ID | [TIGR01273] arginine decarboxylase, biosynthetic |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.901624 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.151183 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATT GGTCTATTAA TGATGCCCGC ACCGGGTACA ACGTTAATTA TTGGAGTCAG
GGGCTTTATG GGATTAGTGA TACCGGGGAA GTAACCGTCT CGCCCGATCC CTCTCACCCT
GAATACAGTA TAGGGCTAAA TGAACTTGCC AAAGATATGG TCAAGTCTGG CGTTGCCTTG
CCAGTGCTGA TTAGATTCCC TCAGATCTTA CATCATAGGG TAAACAGCGT TTGTCAGGCG
TTCAATCAGG CAATACAAAA GTATGAATAT CAATCTGATT ACCTGTTGGT CTATCCGATC
AAGGTCAATC AGCAGCAAAC GGTTGTCGAA GAGATCTTGG CCAGTCAGGT TTCTAAAGAA
GTGCCACAAT TGGGGCTCGA AGCGGGTAGT AAGCCAGAGT TGATGGCTGT ACTTGCCATG
GCTCAGAAAG CCAGTTCAGT GATCATCTGT AATGGTTATA AAGATGTCGA ATACATTCGT
CTGGCTTTAA TCGGTGAAAA ACTGGGTCAT AAAGTTTATA TCGTTTTAGA AAAGTTATCT
GAACTTAAGA TCATTCTGGA AGAAGCTGAA AAGCTTGGTG TTACGCCTAG ATTAGGTTGT
CGGGTACGTC TTGCGTTTCA AGGTAAAGGC AAGTGGCAGG CCAGTGGCGG AGAGAAATCG
AAGTTTGGTC TTTCGGCTTC TCAGGTACTT ACCGTTATCG ACTCATTAAA ACAATCGCAG
ATGCTGGATT CATTGCAGTT GTTACATTTT CACCTTGGTT CTCAGATTGC CAATATTCGG
GATATTCGCC AGGGAGTGAG TGAAGCAGGG CGCTTCTATT GCGAACTTCA AAAGCTTGGG
GCTAACGTTA AGTGCTTCGA TGTCGGTGGT GGTCTGGCTG TCGATTATGA CGGCACCCGT
AGCCAAAGTT CCAGCTCGAT GAACTACGGA TTGACCGAGT ACGCTAATAA TATCGTGAGT
GTACTTACCG ATCTTTGTAA TGAATATAAG GAGCCAATGC CAAGAATTAT CTCGGAGTCG
GGTCGTTTCC TTACGGCACA TCATGCTGTG TTGATCACCG ATGTCATCGG CACCGAAGCG
TATAAGCCAG AAGTTATTGA GGAACCAGAG ACCGAGGCGC CACAGCTTCT GCATAACATG
TGGCAATCTT GGAGCGAAGT CAGTGGCAGA GCCGATCAAC GTGCCTTGAT TGAGATCTAT
CATGATTGTC AAAGCGATCT GAGCGAGGTG CATTCACTGT TTGCCTTAGG TCAGTTGAGT
TTATCTGAAA GAGCATGGGC GGAGCAGGTT AACCTTAGAG TTTGCCATGA ACTTCGTGAT
GTGATGAGTC CGAAATATCG TTTCCATCGC CCCATCATCG ATGAGTTAAA TGAAAAGTTG
GCTGATAAGT TTTTCGTCAA CTTCTCGCTA TTTCAGTCAC TGCCTGATGC CTGGGGAATC
GATCAAGTGT TTCCTATCAT GCCGTTATCT GGTCTCGATA AGGCGCCTGA GCGCCGTGCG
GTCATGTTAG ATATTACCTG TGACTCAGAT GGTACAATCG ATCAATATGT CGACGGTCAG
GGAATTGAAA CCACAATACC GGTGCCGACC TGGAGTGCAG AGAGTCCGTA TCTGATAGGC
TTCTTCCTTG TTGGGGCATA TCAGGAGATC TTGGGTGATA TGCATAACCT GTTTGGCGAC
ACTAACTCGG CAGTCGTACG GCTCGATGAC GATGGCAGAA CCAATATTGA ATCGGTTTTG
GCTGGAGACA CGGTGGCGGA CGTACTTAGG TATGTGAACC TCGATGCAGT ATCATTTATG
CGTACCTATG AAGAGTTGGT CAATAAGCAT ATTCAAGAAG CTGAGCGAGC GAATATACTC
GAAGAGCTAC AGCTAGGGTT GAAAGGTTAT ACTTACCTGG AAGACTTCTC ATAG
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| Protein sequence | MSDWSINDAR TGYNVNYWSQ GLYGISDTGE VTVSPDPSHP EYSIGLNELA KDMVKSGVAL
PVLIRFPQIL HHRVNSVCQA FNQAIQKYEY QSDYLLVYPI KVNQQQTVVE EILASQVSKE
VPQLGLEAGS KPELMAVLAM AQKASSVIIC NGYKDVEYIR LALIGEKLGH KVYIVLEKLS
ELKIILEEAE KLGVTPRLGC RVRLAFQGKG KWQASGGEKS KFGLSASQVL TVIDSLKQSQ
MLDSLQLLHF HLGSQIANIR DIRQGVSEAG RFYCELQKLG ANVKCFDVGG GLAVDYDGTR
SQSSSSMNYG LTEYANNIVS VLTDLCNEYK EPMPRIISES GRFLTAHHAV LITDVIGTEA
YKPEVIEEPE TEAPQLLHNM WQSWSEVSGR ADQRALIEIY HDCQSDLSEV HSLFALGQLS
LSERAWAEQV NLRVCHELRD VMSPKYRFHR PIIDELNEKL ADKFFVNFSL FQSLPDAWGI
DQVFPIMPLS GLDKAPERRA VMLDITCDSD GTIDQYVDGQ GIETTIPVPT WSAESPYLIG
FFLVGAYQEI LGDMHNLFGD TNSAVVRLDD DGRTNIESVL AGDTVADVLR YVNLDAVSFM
RTYEELVNKH IQEAERANIL EELQLGLKGY TYLEDFS
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