Gene Ssed_2606 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2606 
Symbol 
ID5610367 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand- 
Start bp3158305 
End bp3158946 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content48% 
IMG OID640933525 
Productpyridoxal 5'-phosphate synthase 
Protein accessionYP_001474341 
Protein GI157375741 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.397088 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.714763 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAAGC TGAGTGATAT CAGACGTGAG TATACGCTTG GAGGGCTTCA TAAAGAGGAC 
CTTCCCGGTG ATCCTATTGA GCTATTTTCA AAATGGATGG AACAAGCCCG CGACTCGGAG 
GTACTCAGCG ATCCGACGGC CATGTCGGTT GCAACGGTAG ACGCTGACGG ACAACCCTTC 
CAGCGGATCG TTTTGCTGAA GCGGTTCGAT AAGGGAGGCT TTGTTTTCTT CACTAACTTA 
GAAAGTCGAA AATCACAGCA GATAGCAATA AACTCGAAGG TGAGTTTATT GTTTCCGTGG 
CATTCACTGG AACGTCAGGT CGCGATCACC GGCGAAGCCG AGCCTCTGTC GACGGCTGAA 
GTGATGAAGT ACTTTATCAC CAGACCTAAA GAGAGCCAGA TTGCGGCCTG GGTCTCTAAA 
CAATCCAGCA AAATATCGGC GAGACAGGCG CTTGAATCTA AGTTTGCGGA GATGAAAGCG 
AAATTTAGTC AGGGTGAGGT TCCACTGCCT AAGTTTTGGG GAGGCTATAT TGTTAAACCC 
ACCAGTATTG AATTTTGGCA GGGTGGTGAG CATAGACTAC ATGATCGTTT TCTCTACTCT 
AAAGAAAATT CTGGCTGGGA TATAAGCCGA CTCGCACCAT AG
 
Protein sequence
MSKLSDIRRE YTLGGLHKED LPGDPIELFS KWMEQARDSE VLSDPTAMSV ATVDADGQPF 
QRIVLLKRFD KGGFVFFTNL ESRKSQQIAI NSKVSLLFPW HSLERQVAIT GEAEPLSTAE 
VMKYFITRPK ESQIAAWVSK QSSKISARQA LESKFAEMKA KFSQGEVPLP KFWGGYIVKP 
TSIEFWQGGE HRLHDRFLYS KENSGWDISR LAP