Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2566 |
Symbol | |
ID | 5609803 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3115212 |
End bp | 3116105 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640933485 |
Product | transcriptional regulator, LysR family protein |
Protein accession | YP_001474301 |
Protein GI | 157375701 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.169801 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCATAATG CCATTACAAT CGATGCACTG CGGGCGCTGG ATGCCATAGT TCGCAAAGGC AGTTTTGCAG CGGCAGCATC TTCGTTATAC AAGGTGCCCT CGGCACTGAC CTATACGATA AAAAAACTTG AAGAAGATAT CGGGACAGCG CTGTTTGATA GAAGCAAACA GCGGGCACAT TTAACCCCTG CGGGTAAGTT AGTGCTGGAA CAGGGGCGAG AAATTCTACT GGCCACCAAC CGATTAGTGG ATTCGGTACA GCAACTGGAA TCTGGATGGG AGGCTGAAAT TCGCCTCTCC AGAGATACCG TTATTTCACC AATGCCGCTG TTTAACTTGG TTAACCAGTT CAATCAACTT GAACATAGTG TCAATATCAG CTTAGACGTT GAAGCAGTAG GCGGCGGATG GGATGCACTA CACAGCCGCC GGGCCGACAT TGTTATCGGC GCTTCGGGTG AACTGCCAAG GGGATTGTTT CAAACCCATA AGATTGGCGA AGTAGCTTTT GTGTTTGCCG TTGCCCCGCA TCATCCTTTG GCCTTTGTCG ATGGTGTGCT CGACGCCGAT CTGTTAACCC ATTATCCCGC CGTCGTGGTG GCCGACACCT CACAGATATT ACCCATTCGC GATAGTGGTG TGTTTAAGAG TAAACAGATG ATCCGCGTCA ATACCATGGA GGCTAAGCTC GCGGCTCAAC TCCAAGGTTT GGGGATCGGC TTCCTGCCCC TGCATATGGC CAAACCCTAC ATTGATCGGG GTGAGTTAAT TCAAAAGCCC TGCTCTATCC CCAGACAAAA CCAAAGTTTG TATATCGCCT GGCATAAAGA TCAGCAAGGC CGGGCGTTTG AATGGTTTAT CGAACATCTG CCCAAAATGG ATTGGGGGTT GTGA
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Protein sequence | MHNAITIDAL RALDAIVRKG SFAAAASSLY KVPSALTYTI KKLEEDIGTA LFDRSKQRAH LTPAGKLVLE QGREILLATN RLVDSVQQLE SGWEAEIRLS RDTVISPMPL FNLVNQFNQL EHSVNISLDV EAVGGGWDAL HSRRADIVIG ASGELPRGLF QTHKIGEVAF VFAVAPHHPL AFVDGVLDAD LLTHYPAVVV ADTSQILPIR DSGVFKSKQM IRVNTMEAKL AAQLQGLGIG FLPLHMAKPY IDRGELIQKP CSIPRQNQSL YIAWHKDQQG RAFEWFIEHL PKMDWGL
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