Gene Ssed_2566 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2566 
Symbol 
ID5609803 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3115212 
End bp3116105 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content50% 
IMG OID640933485 
Producttranscriptional regulator, LysR family protein 
Protein accessionYP_001474301 
Protein GI157375701 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.169801 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones45 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCATAATG CCATTACAAT CGATGCACTG CGGGCGCTGG ATGCCATAGT TCGCAAAGGC 
AGTTTTGCAG CGGCAGCATC TTCGTTATAC AAGGTGCCCT CGGCACTGAC CTATACGATA
AAAAAACTTG AAGAAGATAT CGGGACAGCG CTGTTTGATA GAAGCAAACA GCGGGCACAT
TTAACCCCTG CGGGTAAGTT AGTGCTGGAA CAGGGGCGAG AAATTCTACT GGCCACCAAC
CGATTAGTGG ATTCGGTACA GCAACTGGAA TCTGGATGGG AGGCTGAAAT TCGCCTCTCC
AGAGATACCG TTATTTCACC AATGCCGCTG TTTAACTTGG TTAACCAGTT CAATCAACTT
GAACATAGTG TCAATATCAG CTTAGACGTT GAAGCAGTAG GCGGCGGATG GGATGCACTA
CACAGCCGCC GGGCCGACAT TGTTATCGGC GCTTCGGGTG AACTGCCAAG GGGATTGTTT
CAAACCCATA AGATTGGCGA AGTAGCTTTT GTGTTTGCCG TTGCCCCGCA TCATCCTTTG
GCCTTTGTCG ATGGTGTGCT CGACGCCGAT CTGTTAACCC ATTATCCCGC CGTCGTGGTG
GCCGACACCT CACAGATATT ACCCATTCGC GATAGTGGTG TGTTTAAGAG TAAACAGATG
ATCCGCGTCA ATACCATGGA GGCTAAGCTC GCGGCTCAAC TCCAAGGTTT GGGGATCGGC
TTCCTGCCCC TGCATATGGC CAAACCCTAC ATTGATCGGG GTGAGTTAAT TCAAAAGCCC
TGCTCTATCC CCAGACAAAA CCAAAGTTTG TATATCGCCT GGCATAAAGA TCAGCAAGGC
CGGGCGTTTG AATGGTTTAT CGAACATCTG CCCAAAATGG ATTGGGGGTT GTGA
 
Protein sequence
MHNAITIDAL RALDAIVRKG SFAAAASSLY KVPSALTYTI KKLEEDIGTA LFDRSKQRAH 
LTPAGKLVLE QGREILLATN RLVDSVQQLE SGWEAEIRLS RDTVISPMPL FNLVNQFNQL
EHSVNISLDV EAVGGGWDAL HSRRADIVIG ASGELPRGLF QTHKIGEVAF VFAVAPHHPL
AFVDGVLDAD LLTHYPAVVV ADTSQILPIR DSGVFKSKQM IRVNTMEAKL AAQLQGLGIG
FLPLHMAKPY IDRGELIQKP CSIPRQNQSL YIAWHKDQQG RAFEWFIEHL PKMDWGL