Gene Ssed_2563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2563 
Symbol 
ID5609668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3111839 
End bp3113326 
Gene Length1488 bp 
Protein Length495 aa 
Translation table11 
GC content45% 
IMG OID640933482 
Productsulfate transporter 
Protein accessionYP_001474298 
Protein GI157375698 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0659] Sulfate permease and related transporters (MFS superfamily) 
TIGRFAM ID[TIGR00815] high affinity sulphate transporter 1 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.542829 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTAAAAA ACTTTAAAAC TGATTGGATG TCCAATATCC GTGGCGACTT GCTCGCGGGT 
ATCGTTGTCG CGTTAGCGTT AATTCCCGAG GCTATCGCAT TTTCTATTAT TGCGGGTGTT
GACCCGAAAG TGGGGTTATA TGCCTCATTT AGTATCTCGG TAGTGATCGC CTTTACTGGT
GGCCGCAGCG GAATGATCTC TGCGGCAACC GGTGCGATGG CGCTGCTGAT GATCACATTG
GTTAAAGAGC ATGGTTTAGA ATACTTGCTG GCTGCAACCG TGTTAACGGG GCTGCTACAG
ATTTTAGCGG GTTACTTAAA ACTGGGTAGC TTGATGCGTT TTGTGTCGCG CTCTGTGGTA
ACCGGGTTTG TTAATGCGCT GGCAATATTG ATTTTTATGG CCCAGCTACC GGAACTCACC
AATGTGACCT GGCATGTGTA TGCCATGACA GTGGCTGGTC TTGGTATTAT TTATCTCTTT
CCATACCTGC CGATTATCGG CAAATTAATT CCCTCTCCGT TGATCTGTAT TATTGCGTTA
ACCGCTATTA CCATGTTGTT TAATATTGAC GTGCGTACTG TCGGCGATAT GGGTAATTTA
CCTGATACCT TGCCGATTTT CTTATGGCCC GATGTGCCGT TAAATCTGGA AACCTTATTG
ATTGTATTGC CTTATTCCAT GGGTCTTGCT GTGGTGGGCT TATTAGAGTC AATGATGACG
GCGACGATTG TCGATGACCT GACCGATACC AAGAGTGATA AAAATCGCGA GTGTAAGGGT
CAAGGTATTG CCAACATGTT CACTGGCTTT CTTGGTGGTA TGGCGGGTTG TGCCATGATT
GGTCAATCGA TGATCAATAT CAAGTCCGGT GGACGTGGAC GCTTATCCAC TTTAGCGGCG
GGTATATATC TGTTAATTAT GGTGGTATTT CTTGGGCCTT GGTTAAAACA GATCCCAATG
GCAGCATTAG TGGCGGTCAT GATTATGGTG GCAATCGGTA CCTTCTCATG GCGTTCAATT
ACCGATCTGA AAAAACATCC ACTGTCGACC AACATTGTTA TGCTAGCCAC GGTAGTCATA
GTGGTCGTGA CGCATAATTT AGCCATTGGT GTGTTTATTG GTGTGCTGCT TGCCTCACTA
TTCTTTGCTA ATAAGATTAG TCGTATGATG GTGGTCAGAG ATGATATTGC AAATAGTGAT
AGCCGTGAAT ATCGAGTTGT CGGGCAAGTA TTTTTCGCAT CATCAGATAA ATTTATCGAG
TCATTCGATT TCAAAGAGGT GTTAGAGACG GTAACGATTG ATCTGTCGGC AGCCCACTTT
TGGGATGTGA GTGCGGTGTC TGCATTGGAT AAAGTGGTGA TTAAATTCCG CCGAGAGGGG
ACGCAAGTTA ACCTCATCGG TATGAATCAA GCTACGAGCA CTATCGTCGA CAAATTCGGA
GTGCACGATA AACCTGAAGA AGTTGAAAAA TTACTGGCTG GACACTAA
 
Protein sequence
MLKNFKTDWM SNIRGDLLAG IVVALALIPE AIAFSIIAGV DPKVGLYASF SISVVIAFTG 
GRSGMISAAT GAMALLMITL VKEHGLEYLL AATVLTGLLQ ILAGYLKLGS LMRFVSRSVV
TGFVNALAIL IFMAQLPELT NVTWHVYAMT VAGLGIIYLF PYLPIIGKLI PSPLICIIAL
TAITMLFNID VRTVGDMGNL PDTLPIFLWP DVPLNLETLL IVLPYSMGLA VVGLLESMMT
ATIVDDLTDT KSDKNRECKG QGIANMFTGF LGGMAGCAMI GQSMINIKSG GRGRLSTLAA
GIYLLIMVVF LGPWLKQIPM AALVAVMIMV AIGTFSWRSI TDLKKHPLST NIVMLATVVI
VVVTHNLAIG VFIGVLLASL FFANKISRMM VVRDDIANSD SREYRVVGQV FFASSDKFIE
SFDFKEVLET VTIDLSAAHF WDVSAVSALD KVVIKFRREG TQVNLIGMNQ ATSTIVDKFG
VHDKPEEVEK LLAGH