Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2563 |
Symbol | |
ID | 5609668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3111839 |
End bp | 3113326 |
Gene Length | 1488 bp |
Protein Length | 495 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933482 |
Product | sulfate transporter |
Protein accession | YP_001474298 |
Protein GI | 157375698 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0659] Sulfate permease and related transporters (MFS superfamily) |
TIGRFAM ID | [TIGR00815] high affinity sulphate transporter 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.542829 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAAAAA ACTTTAAAAC TGATTGGATG TCCAATATCC GTGGCGACTT GCTCGCGGGT ATCGTTGTCG CGTTAGCGTT AATTCCCGAG GCTATCGCAT TTTCTATTAT TGCGGGTGTT GACCCGAAAG TGGGGTTATA TGCCTCATTT AGTATCTCGG TAGTGATCGC CTTTACTGGT GGCCGCAGCG GAATGATCTC TGCGGCAACC GGTGCGATGG CGCTGCTGAT GATCACATTG GTTAAAGAGC ATGGTTTAGA ATACTTGCTG GCTGCAACCG TGTTAACGGG GCTGCTACAG ATTTTAGCGG GTTACTTAAA ACTGGGTAGC TTGATGCGTT TTGTGTCGCG CTCTGTGGTA ACCGGGTTTG TTAATGCGCT GGCAATATTG ATTTTTATGG CCCAGCTACC GGAACTCACC AATGTGACCT GGCATGTGTA TGCCATGACA GTGGCTGGTC TTGGTATTAT TTATCTCTTT CCATACCTGC CGATTATCGG CAAATTAATT CCCTCTCCGT TGATCTGTAT TATTGCGTTA ACCGCTATTA CCATGTTGTT TAATATTGAC GTGCGTACTG TCGGCGATAT GGGTAATTTA CCTGATACCT TGCCGATTTT CTTATGGCCC GATGTGCCGT TAAATCTGGA AACCTTATTG ATTGTATTGC CTTATTCCAT GGGTCTTGCT GTGGTGGGCT TATTAGAGTC AATGATGACG GCGACGATTG TCGATGACCT GACCGATACC AAGAGTGATA AAAATCGCGA GTGTAAGGGT CAAGGTATTG CCAACATGTT CACTGGCTTT CTTGGTGGTA TGGCGGGTTG TGCCATGATT GGTCAATCGA TGATCAATAT CAAGTCCGGT GGACGTGGAC GCTTATCCAC TTTAGCGGCG GGTATATATC TGTTAATTAT GGTGGTATTT CTTGGGCCTT GGTTAAAACA GATCCCAATG GCAGCATTAG TGGCGGTCAT GATTATGGTG GCAATCGGTA CCTTCTCATG GCGTTCAATT ACCGATCTGA AAAAACATCC ACTGTCGACC AACATTGTTA TGCTAGCCAC GGTAGTCATA GTGGTCGTGA CGCATAATTT AGCCATTGGT GTGTTTATTG GTGTGCTGCT TGCCTCACTA TTCTTTGCTA ATAAGATTAG TCGTATGATG GTGGTCAGAG ATGATATTGC AAATAGTGAT AGCCGTGAAT ATCGAGTTGT CGGGCAAGTA TTTTTCGCAT CATCAGATAA ATTTATCGAG TCATTCGATT TCAAAGAGGT GTTAGAGACG GTAACGATTG ATCTGTCGGC AGCCCACTTT TGGGATGTGA GTGCGGTGTC TGCATTGGAT AAAGTGGTGA TTAAATTCCG CCGAGAGGGG ACGCAAGTTA ACCTCATCGG TATGAATCAA GCTACGAGCA CTATCGTCGA CAAATTCGGA GTGCACGATA AACCTGAAGA AGTTGAAAAA TTACTGGCTG GACACTAA
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Protein sequence | MLKNFKTDWM SNIRGDLLAG IVVALALIPE AIAFSIIAGV DPKVGLYASF SISVVIAFTG GRSGMISAAT GAMALLMITL VKEHGLEYLL AATVLTGLLQ ILAGYLKLGS LMRFVSRSVV TGFVNALAIL IFMAQLPELT NVTWHVYAMT VAGLGIIYLF PYLPIIGKLI PSPLICIIAL TAITMLFNID VRTVGDMGNL PDTLPIFLWP DVPLNLETLL IVLPYSMGLA VVGLLESMMT ATIVDDLTDT KSDKNRECKG QGIANMFTGF LGGMAGCAMI GQSMINIKSG GRGRLSTLAA GIYLLIMVVF LGPWLKQIPM AALVAVMIMV AIGTFSWRSI TDLKKHPLST NIVMLATVVI VVVTHNLAIG VFIGVLLASL FFANKISRMM VVRDDIANSD SREYRVVGQV FFASSDKFIE SFDFKEVLET VTIDLSAAHF WDVSAVSALD KVVIKFRREG TQVNLIGMNQ ATSTIVDKFG VHDKPEEVEK LLAGH
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