| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2557 |
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| Symbol | |
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| ID | 5610087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3104548 |
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| End bp | 3105756 |
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| Gene Length | 1209 bp |
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| Protein Length | 402 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933476 |
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| Product | porin |
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| Protein accession | YP_001474292 |
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| Protein GI | 157375692 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.40328 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATACA ATTTACTAGC AACGGCTTTA GCTGCCGTAA TATTTGCCCC ATCAGTTGCG
GCAGTCGAAA TCTATAAAGA TGACAAGAAC ACAGTGGAGA TAGGTGGCTT CATGGACGCA
CGTGTCATCA ATACCCAAGC CGCGACTGAA GTCGTTAACG GCGCGTCACG GATTAACTTA
GGTTTCACCC GTGAAATGAG TGATGGGTGG AAAGCGTTCA CTAAGCTGGA GTGGGGCGTT
AACCCATTCG GTAACAGTGA AATAGTTTAT AGCAGTGAGA GTAACTTCGA GTCTAAGAGC
GGAGATTTTT TAAATAACCG CCTCGGGTAT GTCGGTATTG GCCATGATAC GTACGGTACC
TTAAGCATAG GTAAGCAGTG GGGCGCTTGG TACGACGTTG TTTATAACAC TAACTATGGC
TTCGTATGGG ACGGCAACGC CGCAGGTGTG TATACCTATA ACAAGGCCGA TGGTGCGATC
AATGGCACAG GTCGCGGTGA TAAGGTGGTT CAATACCGTA ACAATTTCGG TGATGTGAGC
TTCGCACTTC AAGCTCAGCT GAAACACGAT ATTTTTTATA CCTGTGAAGA AGCACAAGAT
CTCGGCACTG ATTGTGAAGA ACGTTGGAAG GCTAACGAAG AGTCACAAGA GGTCCATTAT
GATTACACTT ACGGTGGCTC TATTACTTAT CTGGCTACAG ATAAGCTCAC GTTAACCACT
GGTGTTAACC GCGGTGAGTT TGAAGTGGCT TTTAATACTG GTGAAATGAT AACTGCAACC
GATCTTATTT ACGGCGTCGG AGCCACCTGG GGAGGCTTCG ATAGTGAGGG CTTCTATGCA
GCAGCTAACT TCAACAAAAA TGAAAATCAC GATACCGATA ACCTAGGCCG TCTAATTAAA
GACTCTTATG GTATCGAATC TCTGTTCTCA TATAAGTTTG ATAATGGTCT GCGTCCATTT
ATCTCCTATA ACGTCTTAGA CGCGGGTAGC GATTACGTTA TTCAGCCAAA CAGTGCCGAT
CCAAACGACG TATTTAAGCG TCAGTTCATC GTTGCAGGCC TGCACTATGT TTGGGATGTG
AACACAGTGC TGTATGTAGA AGCACGTAAA GATTACAGTG ATTTTACCAG TGATGACAAG
GATATCGAGG CGAAAATGTC TCTCTCGGAA GATGATGGTG TAGCCGTAGG TATCAGATAC
ACGCTCTAA
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| Protein sequence | MKYNLLATAL AAVIFAPSVA AVEIYKDDKN TVEIGGFMDA RVINTQAATE VVNGASRINL
GFTREMSDGW KAFTKLEWGV NPFGNSEIVY SSESNFESKS GDFLNNRLGY VGIGHDTYGT
LSIGKQWGAW YDVVYNTNYG FVWDGNAAGV YTYNKADGAI NGTGRGDKVV QYRNNFGDVS
FALQAQLKHD IFYTCEEAQD LGTDCEERWK ANEESQEVHY DYTYGGSITY LATDKLTLTT
GVNRGEFEVA FNTGEMITAT DLIYGVGATW GGFDSEGFYA AANFNKNENH DTDNLGRLIK
DSYGIESLFS YKFDNGLRPF ISYNVLDAGS DYVIQPNSAD PNDVFKRQFI VAGLHYVWDV
NTVLYVEARK DYSDFTSDDK DIEAKMSLSE DDGVAVGIRY TL
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