| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2551 |
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| Symbol | |
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| ID | 5609722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3095106 |
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| End bp | 3095924 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933470 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001474286 |
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| Protein GI | 157375686 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.36291 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATCTG TTAAGTACCT TTTATTATTC ATAACTTTAT ATCTGGGAGT TTGCCCAGGC
CTAAAGGTGT GGGCTGTGGT TAGTGAGCCT GACAGTTCAT CGTCGCTGGT TTTTGTGACC
AGCCCTTATG AGCCTTATGT TATCGACGAT GAGGGCAGGG CGAGCGGGAT ATTTCCCGAT
ATTATTCGCG CCGTTTTTAG AGGAAGTAAT ATACGACCTG AATTTGAGTT TCTACCTTGG
TTGAGGGGAG AGCACGAGGT TCAGGCCGGA AAGGCGTTTG CTACGTTCCC CTATCTGAAG
ACAAAAGCCA GAGTCGAGAC TTTCGGGTTT TCGGGACCGA TTATCTATTT CTTTCCTAAG
TTTTTCTATA ACCGATCTCG TTTCCCCGAT GGATTCGAGT GGCAGGCACT CACAGATTTC
AAGGGATATA AAATCGGTGG CGTGCGGGGG TATTGGTATG AACAAGATTT TAAAGATGCC
GAGTTGACGA CGCTTTATGT CACCTCTGAT AGGCAAAATA TTGAGATGTT ACGCATTAAA
CGTATCGATT TTACCCTTAT CGATGAACTT GTCGGCTGGA ACCTGATTAG AAGAACTGCA
CCGTCTTACA TCGGTACTTA TGCGGTTGCG GCCAAGGCTG AAAGTAGCGC CGCCTTTCAT
ATTATGATCT CACCCGATTA CCCGGAAGGA GACAAGCTCA CACTGCAACT GAATATGGGA
TTCAAGCGAA TACAGCAAAG CGGAGAATAC CAAGAGATAC TGGAGAGGTA TCACGTTCCC
GCCGATTACT CGGTAACTCA AACATTAAGC GCTCATTAA
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| Protein sequence | MTSVKYLLLF ITLYLGVCPG LKVWAVVSEP DSSSSLVFVT SPYEPYVIDD EGRASGIFPD
IIRAVFRGSN IRPEFEFLPW LRGEHEVQAG KAFATFPYLK TKARVETFGF SGPIIYFFPK
FFYNRSRFPD GFEWQALTDF KGYKIGGVRG YWYEQDFKDA ELTTLYVTSD RQNIEMLRIK
RIDFTLIDEL VGWNLIRRTA PSYIGTYAVA AKAESSAAFH IMISPDYPEG DKLTLQLNMG
FKRIQQSGEY QEILERYHVP ADYSVTQTLS AH
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