| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2524 |
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| Symbol | |
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| ID | 5609992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3068789 |
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| End bp | 3069685 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640933443 |
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| Product | alpha/beta hydrolase fold |
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| Protein accession | YP_001474259 |
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| Protein GI | 157375659 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2267] Lysophospholipase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.29675 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGCAAT CTTGCGCCCC CGAAAATGAG GTTGAGTTTC AACTACCTCA TATCCGACTT
TCAGGTCGCC GATGGGGGGC GCCCGATAAG CCATTAATAC TGGCCCTCCA TGGGTGGCTG
GATAATGCCA ATAGCTTTGC GCCTTTAGCC GAAGAGTTAT CCTCTGATTA TCAAATCTTA
GCGATAGACT GGCCGGGCCA TGGCGGATCG GAGCATAGAC CCGGTTCATA CCCGCTGCAT
TGGGTTGATT ACCTCTATGA TCTTGAGCTC TTGGTTGAAA GATTGTCGCA GCGTCAGGTG
CCAGCGGCTA TTATTGGCCA CTCTCTAGGG GGAATCGTTG CGTCAGCCTA TACCGCAGCC
TTTCCCGAAA GAGTAGATAA ACTGGTGTTG ATAGAAGCGA TTAGCCCACT ATTTGAGGCT
GCATCGAAAA ACAATCAACG GCTGCGACAT AGCTTTATCA GTCATGCCCG TTTTTTGAAG
AAACGGGATG ATGACCCGGC AGTTTATGAC TCTATCGAGG TTGCCGTGAA AGCCAGAATG
CGGTTAACTG GGCTCGAAGA GAGATGGTGT CGCTTGCTGG TCGATAGAAA TATGCAAAAA
CATGATATTG GGGTCAGTTG GCGCAGCGAT CCAAGGTTAA AATTAGATTC ACCCATCAGG
CTGACATTCG AACAAGTCGA TGCACTGATG AGTGGCCACA GTTCCAGTAC CTTACTTATT
ACTGCGGACC GGGGTTATTC GGAGTTGAAT ACGCTTTTGC CGAAAGCAAA ACTGTGGTTT
AAACACCTTA CCTGTGTCGA GCTTGAAGGT GACCACCATT TACATATGGG AAATGCCGTT
AACACGGCTC ATGTTATCAG CGATTACTTA ACATCAATTG TCACTAACAC AGATTAA
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| Protein sequence | MWQSCAPENE VEFQLPHIRL SGRRWGAPDK PLILALHGWL DNANSFAPLA EELSSDYQIL
AIDWPGHGGS EHRPGSYPLH WVDYLYDLEL LVERLSQRQV PAAIIGHSLG GIVASAYTAA
FPERVDKLVL IEAISPLFEA ASKNNQRLRH SFISHARFLK KRDDDPAVYD SIEVAVKARM
RLTGLEERWC RLLVDRNMQK HDIGVSWRSD PRLKLDSPIR LTFEQVDALM SGHSSSTLLI
TADRGYSELN TLLPKAKLWF KHLTCVELEG DHHLHMGNAV NTAHVISDYL TSIVTNTD
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