Gene Ssed_2502 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2502 
Symbol 
ID5612552 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3044078 
End bp3046318 
Gene Length2241 bp 
Protein Length746 aa 
Translation table11 
GC content45% 
IMG OID640933423 
Productcollagenase-like protein 
Protein accessionYP_001474239 
Protein GI157375639 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0826] Collagenase and related proteases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.503721 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.268664 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAACC AATTTGAATT GCTGGCACCC GGTGGCGATA TAGATTCGAT AAAAGCCGCC 
ATTGTGGCGG GCGCCGATGC TATCTATTGC GGTTTAGATC ATTTCAACGC GAGAACCCGA
GCGGCAAATA TCTCATTCGA TGACTTGAAC GGTATCTTAA GGCTGGCTCA TAAGAGCGAC
TGCCAAATAT TCCTGACGCT GAATATCATC ATCTTAGAGA GTGAGCTCCC GGCGTTAATC
CGCCTGCTCA ATGAACTGGT TAACACAGGT ATCGACGGCG TCATAATTCA AGACTTAGGC
CTGTTTTATA TCCTCTCCAG GTACTATAAA ACCCTCGATG TACACGCATC AACTCAGGTG
ACGACACACA ATGAGGGCCA GATATTATTT CTGAATAAGC TGGGTGCAGG CAGAACAAAC
CTTTCCCGCG AATTAAACAT CGACGAGATT AAACAGCTAA CAAAAGTCTC TCATCAGAAC
GATATGATGA CAGAGGTGTT CGTTCACGGC TCTAACTGTA TCGGCTTCTC CGGACTGTGC
TATATCAGCT CAGCCCATGG CGGTAACTCA GGCAACCGGG GACGCTGCAG TCAGCCATGC
AGGGACCAGT ACCAAACGAC TCGAGCAGGT AAAGATTTCC CCCTGAATCT CAAAGACAAC
TCCGCATTCT CAGATATTGC CGCGCTCGGT GACGCCGGTG TCGACTCGTT GAAGATCGAA
GGCCGTATTA AGAAATTTGA CTACGTCTAT ACCGTAGTCA GCAGCTGGAG AGAACAGATA
CAGCGCTATT GCCAGCATAA GAGCATAAAG AGTGACAATG AAGATCTCTA TAAGGTTTTC
AACCGAGACT TTACCAACGC CTACCTTAAG GGTGATATTA ATAAAAATAT GTTTATTGAT
AATCCAAGAG GCAACTCGGT TCAACATTTT ACCGCCATCA AAGGTTATAA CACTGAGGTA
GAGATCCAGT CGGTTAAGCA ATCCCTCTAT GACGAAAAAA CAGTCCTAAT TCAAACCGTC
GAAGAGAAGA TAAAAGAGTT AAACATTGGA AAAACGCCGC TGACAATCAG AGTTTCCGGT
AAATTAAACA CGCCCTTAAC CGTGTCGGTG GAGACACCGG ATAAGGAGTT TACAGTTCAC
TCAGACACAA ATCTGTTCAA AGCCGGGAAA TACACCCTCG ATAACGCCTG TATCAAGCAA
AGATTCAAGA GCCTGAACAA CGCGAAACAT GAGATAGCTG AGCTTAATAC CGAACAGCTC
AATGCAGACC TGCTAATCTC GTTTAAAGAG CTAACCGTTT TAAAGCATCG GATCGAGTAT
CTGCTCAATG ATGAGAAAGC CCTCATCGAG CCGATAACAC TGACCAAACT GCCGAAACAG
CGACACTCTG CCAAAGCGAG TCTGTCGGCG CTGATCTCAT CGACTAAAGA TTTAGATCTC
TGTGATACCG GCAATGCAGA GATCTATTAC CAGCTTCCGG ACTGTATCGA GAGCCAATAC
AGCCAACTTA TCGAACTGTT TTCTAACAAT GCGCGTTTAA TCCCCTGGTT CCCGTCGATT
CTTATCGGTG AAGACTATCG GGCAGGTGTA AAGCTGTTAA AAACGATTAA GCCAAAGCTG
ATAGTGACCA ACAACACAGG CATTGCTCAA GCCGCATTTG AAAACGGAAT AGATTGGATT
GCGGGGCCCT ACCTTAACAT CACCAACTCA TATAGCCTGT TGGCGATGAA GGAGGAGTTT
AACTGTTATG GGTCATTTAT ATCCAACGAA ATTAACAGGA AACAGATAAA ACACATTGCA
GGCTGCAGTG ACATGAAGCT GTATTACAGC ATCTATCACC CAATCTTGCT GTTAACCAGC
AGACAGTGTT TATTTCATCA GACTACAGGT TGTCATAAAG AGTCTATGGA TGCCGACTGC
CTGACCGAAT GCAAGAAATC TGTCTCTATC ATGAATTTAA AGGATACCGC TTTTGTCATC
GATAAGCAGA CGGGTGAGCA CAACAACATG TATGGCAGTC AGCACTTCCT AAATACTGAG
ATAGTGAGCG ATATACCAGA TATGTTCAGC AGCTTTTTTA TCGATCTCAG AGGTATCAGA
ACCAATACCC GAGCCGGACG GGATAAATCG ACAATAGTAC GTCTTTTTCA AATGCTGCTC
GAAGGTCAGA GTGAGGCAGA AGCTGAGCTT CACCAACTGA TTGGCCACAC TATCGACACC
CAATATAAAA AGGGGCTGTA A
 
Protein sequence
MKNQFELLAP GGDIDSIKAA IVAGADAIYC GLDHFNARTR AANISFDDLN GILRLAHKSD 
CQIFLTLNII ILESELPALI RLLNELVNTG IDGVIIQDLG LFYILSRYYK TLDVHASTQV
TTHNEGQILF LNKLGAGRTN LSRELNIDEI KQLTKVSHQN DMMTEVFVHG SNCIGFSGLC
YISSAHGGNS GNRGRCSQPC RDQYQTTRAG KDFPLNLKDN SAFSDIAALG DAGVDSLKIE
GRIKKFDYVY TVVSSWREQI QRYCQHKSIK SDNEDLYKVF NRDFTNAYLK GDINKNMFID
NPRGNSVQHF TAIKGYNTEV EIQSVKQSLY DEKTVLIQTV EEKIKELNIG KTPLTIRVSG
KLNTPLTVSV ETPDKEFTVH SDTNLFKAGK YTLDNACIKQ RFKSLNNAKH EIAELNTEQL
NADLLISFKE LTVLKHRIEY LLNDEKALIE PITLTKLPKQ RHSAKASLSA LISSTKDLDL
CDTGNAEIYY QLPDCIESQY SQLIELFSNN ARLIPWFPSI LIGEDYRAGV KLLKTIKPKL
IVTNNTGIAQ AAFENGIDWI AGPYLNITNS YSLLAMKEEF NCYGSFISNE INRKQIKHIA
GCSDMKLYYS IYHPILLLTS RQCLFHQTTG CHKESMDADC LTECKKSVSI MNLKDTAFVI
DKQTGEHNNM YGSQHFLNTE IVSDIPDMFS SFFIDLRGIR TNTRAGRDKS TIVRLFQMLL
EGQSEAEAEL HQLIGHTIDT QYKKGL