Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2502 |
Symbol | |
ID | 5612552 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 3044078 |
End bp | 3046318 |
Gene Length | 2241 bp |
Protein Length | 746 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933423 |
Product | collagenase-like protein |
Protein accession | YP_001474239 |
Protein GI | 157375639 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0826] Collagenase and related proteases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.503721 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.268664 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAACC AATTTGAATT GCTGGCACCC GGTGGCGATA TAGATTCGAT AAAAGCCGCC ATTGTGGCGG GCGCCGATGC TATCTATTGC GGTTTAGATC ATTTCAACGC GAGAACCCGA GCGGCAAATA TCTCATTCGA TGACTTGAAC GGTATCTTAA GGCTGGCTCA TAAGAGCGAC TGCCAAATAT TCCTGACGCT GAATATCATC ATCTTAGAGA GTGAGCTCCC GGCGTTAATC CGCCTGCTCA ATGAACTGGT TAACACAGGT ATCGACGGCG TCATAATTCA AGACTTAGGC CTGTTTTATA TCCTCTCCAG GTACTATAAA ACCCTCGATG TACACGCATC AACTCAGGTG ACGACACACA ATGAGGGCCA GATATTATTT CTGAATAAGC TGGGTGCAGG CAGAACAAAC CTTTCCCGCG AATTAAACAT CGACGAGATT AAACAGCTAA CAAAAGTCTC TCATCAGAAC GATATGATGA CAGAGGTGTT CGTTCACGGC TCTAACTGTA TCGGCTTCTC CGGACTGTGC TATATCAGCT CAGCCCATGG CGGTAACTCA GGCAACCGGG GACGCTGCAG TCAGCCATGC AGGGACCAGT ACCAAACGAC TCGAGCAGGT AAAGATTTCC CCCTGAATCT CAAAGACAAC TCCGCATTCT CAGATATTGC CGCGCTCGGT GACGCCGGTG TCGACTCGTT GAAGATCGAA GGCCGTATTA AGAAATTTGA CTACGTCTAT ACCGTAGTCA GCAGCTGGAG AGAACAGATA CAGCGCTATT GCCAGCATAA GAGCATAAAG AGTGACAATG AAGATCTCTA TAAGGTTTTC AACCGAGACT TTACCAACGC CTACCTTAAG GGTGATATTA ATAAAAATAT GTTTATTGAT AATCCAAGAG GCAACTCGGT TCAACATTTT ACCGCCATCA AAGGTTATAA CACTGAGGTA GAGATCCAGT CGGTTAAGCA ATCCCTCTAT GACGAAAAAA CAGTCCTAAT TCAAACCGTC GAAGAGAAGA TAAAAGAGTT AAACATTGGA AAAACGCCGC TGACAATCAG AGTTTCCGGT AAATTAAACA CGCCCTTAAC CGTGTCGGTG GAGACACCGG ATAAGGAGTT TACAGTTCAC TCAGACACAA ATCTGTTCAA AGCCGGGAAA TACACCCTCG ATAACGCCTG TATCAAGCAA AGATTCAAGA GCCTGAACAA CGCGAAACAT GAGATAGCTG AGCTTAATAC CGAACAGCTC AATGCAGACC TGCTAATCTC GTTTAAAGAG CTAACCGTTT TAAAGCATCG GATCGAGTAT CTGCTCAATG ATGAGAAAGC CCTCATCGAG CCGATAACAC TGACCAAACT GCCGAAACAG CGACACTCTG CCAAAGCGAG TCTGTCGGCG CTGATCTCAT CGACTAAAGA TTTAGATCTC TGTGATACCG GCAATGCAGA GATCTATTAC CAGCTTCCGG ACTGTATCGA GAGCCAATAC AGCCAACTTA TCGAACTGTT TTCTAACAAT GCGCGTTTAA TCCCCTGGTT CCCGTCGATT CTTATCGGTG AAGACTATCG GGCAGGTGTA AAGCTGTTAA AAACGATTAA GCCAAAGCTG ATAGTGACCA ACAACACAGG CATTGCTCAA GCCGCATTTG AAAACGGAAT AGATTGGATT GCGGGGCCCT ACCTTAACAT CACCAACTCA TATAGCCTGT TGGCGATGAA GGAGGAGTTT AACTGTTATG GGTCATTTAT ATCCAACGAA ATTAACAGGA AACAGATAAA ACACATTGCA GGCTGCAGTG ACATGAAGCT GTATTACAGC ATCTATCACC CAATCTTGCT GTTAACCAGC AGACAGTGTT TATTTCATCA GACTACAGGT TGTCATAAAG AGTCTATGGA TGCCGACTGC CTGACCGAAT GCAAGAAATC TGTCTCTATC ATGAATTTAA AGGATACCGC TTTTGTCATC GATAAGCAGA CGGGTGAGCA CAACAACATG TATGGCAGTC AGCACTTCCT AAATACTGAG ATAGTGAGCG ATATACCAGA TATGTTCAGC AGCTTTTTTA TCGATCTCAG AGGTATCAGA ACCAATACCC GAGCCGGACG GGATAAATCG ACAATAGTAC GTCTTTTTCA AATGCTGCTC GAAGGTCAGA GTGAGGCAGA AGCTGAGCTT CACCAACTGA TTGGCCACAC TATCGACACC CAATATAAAA AGGGGCTGTA A
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Protein sequence | MKNQFELLAP GGDIDSIKAA IVAGADAIYC GLDHFNARTR AANISFDDLN GILRLAHKSD CQIFLTLNII ILESELPALI RLLNELVNTG IDGVIIQDLG LFYILSRYYK TLDVHASTQV TTHNEGQILF LNKLGAGRTN LSRELNIDEI KQLTKVSHQN DMMTEVFVHG SNCIGFSGLC YISSAHGGNS GNRGRCSQPC RDQYQTTRAG KDFPLNLKDN SAFSDIAALG DAGVDSLKIE GRIKKFDYVY TVVSSWREQI QRYCQHKSIK SDNEDLYKVF NRDFTNAYLK GDINKNMFID NPRGNSVQHF TAIKGYNTEV EIQSVKQSLY DEKTVLIQTV EEKIKELNIG KTPLTIRVSG KLNTPLTVSV ETPDKEFTVH SDTNLFKAGK YTLDNACIKQ RFKSLNNAKH EIAELNTEQL NADLLISFKE LTVLKHRIEY LLNDEKALIE PITLTKLPKQ RHSAKASLSA LISSTKDLDL CDTGNAEIYY QLPDCIESQY SQLIELFSNN ARLIPWFPSI LIGEDYRAGV KLLKTIKPKL IVTNNTGIAQ AAFENGIDWI AGPYLNITNS YSLLAMKEEF NCYGSFISNE INRKQIKHIA GCSDMKLYYS IYHPILLLTS RQCLFHQTTG CHKESMDADC LTECKKSVSI MNLKDTAFVI DKQTGEHNNM YGSQHFLNTE IVSDIPDMFS SFFIDLRGIR TNTRAGRDKS TIVRLFQMLL EGQSEAEAEL HQLIGHTIDT QYKKGL
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