Gene Ssed_2484 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2484 
Symbol 
ID5611163 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3023074 
End bp3023727 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content43% 
IMG OID640933405 
Productputative solute/DNA competence effector 
Protein accessionYP_001474221 
Protein GI157375621 
COG category[T] Signal transduction mechanisms 
COG ID[COG3109] Activator of osmoprotectant transporter ProP 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000695377 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.223616 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAAGTAA TGATGGAATC AACAGAGAAG TTGACCGACA CCAACGCAAT TCTTGCGTAT 
TTATATGAAA CATTTCCTTT GTGCTTTATC GCCGAGGGTG AAACGAAGCC ATTAAAAATT
GGATTGTTTC AGGATTTGGC TGAAAGGTTA GCTGATGATT CTAAAGTCAG TAAAACTCAA
TTGAGAATTG CCTTAAGACG CTATACTAGT AGTTGGCGTT ACCTAAAGGG CGTTAAAGCC
GGTGCACAGC GTATCGACTT AGACGGAACC CCTTGTGGTG AGTTAGAGCA AGAGCACATA
GACCATGCTC AGTCTACTCT TAAAGAGAGT CAAGAGAAGG CTAAAGCTAA GCGTGTAGCC
AAAGCCGCTG CCGCTAAGAG CGAAGGTCAG GCTGCTAAGG CGAATAAAAA GCCAGCAAAG
AAACCTGCTG CTAAACGTGC AAAACCAGCA CCTAAGCCGG TTAAAGAGCA AGCTCCGGAA
GTTATTTTAA CACCTGCTGT GTTAAATGAG CTGAAACAAA ATCAGCGTGT TAATGTCAAA
CTAGGTAAGA CACCAGTTGC TGGCGTTATC TTAGACATTA AGAAAGAAGA TGTTCAGGTA
CAGTTAGATT CAGGTTTAAC CGTTAAAGTA CGTATTGAAC ACATAATGCT GTAA
 
Protein sequence
MEVMMESTEK LTDTNAILAY LYETFPLCFI AEGETKPLKI GLFQDLAERL ADDSKVSKTQ 
LRIALRRYTS SWRYLKGVKA GAQRIDLDGT PCGELEQEHI DHAQSTLKES QEKAKAKRVA
KAAAAKSEGQ AAKANKKPAK KPAAKRAKPA PKPVKEQAPE VILTPAVLNE LKQNQRVNVK
LGKTPVAGVI LDIKKEDVQV QLDSGLTVKV RIEHIML