Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2484 |
Symbol | |
ID | 5611163 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3023074 |
End bp | 3023727 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640933405 |
Product | putative solute/DNA competence effector |
Protein accession | YP_001474221 |
Protein GI | 157375621 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3109] Activator of osmoprotectant transporter ProP |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000695377 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.223616 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGAAGTAA TGATGGAATC AACAGAGAAG TTGACCGACA CCAACGCAAT TCTTGCGTAT TTATATGAAA CATTTCCTTT GTGCTTTATC GCCGAGGGTG AAACGAAGCC ATTAAAAATT GGATTGTTTC AGGATTTGGC TGAAAGGTTA GCTGATGATT CTAAAGTCAG TAAAACTCAA TTGAGAATTG CCTTAAGACG CTATACTAGT AGTTGGCGTT ACCTAAAGGG CGTTAAAGCC GGTGCACAGC GTATCGACTT AGACGGAACC CCTTGTGGTG AGTTAGAGCA AGAGCACATA GACCATGCTC AGTCTACTCT TAAAGAGAGT CAAGAGAAGG CTAAAGCTAA GCGTGTAGCC AAAGCCGCTG CCGCTAAGAG CGAAGGTCAG GCTGCTAAGG CGAATAAAAA GCCAGCAAAG AAACCTGCTG CTAAACGTGC AAAACCAGCA CCTAAGCCGG TTAAAGAGCA AGCTCCGGAA GTTATTTTAA CACCTGCTGT GTTAAATGAG CTGAAACAAA ATCAGCGTGT TAATGTCAAA CTAGGTAAGA CACCAGTTGC TGGCGTTATC TTAGACATTA AGAAAGAAGA TGTTCAGGTA CAGTTAGATT CAGGTTTAAC CGTTAAAGTA CGTATTGAAC ACATAATGCT GTAA
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Protein sequence | MEVMMESTEK LTDTNAILAY LYETFPLCFI AEGETKPLKI GLFQDLAERL ADDSKVSKTQ LRIALRRYTS SWRYLKGVKA GAQRIDLDGT PCGELEQEHI DHAQSTLKES QEKAKAKRVA KAAAAKSEGQ AAKANKKPAK KPAAKRAKPA PKPVKEQAPE VILTPAVLNE LKQNQRVNVK LGKTPVAGVI LDIKKEDVQV QLDSGLTVKV RIEHIML
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