Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2483 |
Symbol | |
ID | 5611162 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3020972 |
End bp | 3023044 |
Gene Length | 2073 bp |
Protein Length | 690 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640933404 |
Product | carboxy-terminal protease |
Protein accession | YP_001474220 |
Protein GI | 157375620 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000106803 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0256948 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGAAAAA TTACCCTGGC TGCCTCAATC GCCAGTATTT TTGTAGGATT CTCGGCGTGG GCGTTAACCC CATCAATTCC ATTCAGCGAG TTACCCGCAC TATCGCAGGA ACCGCAGCAT AAAGTAGCCA GTAAGCGCGT TACTGGCCTC TTTACTCGCT CTCACTATCA CAGATTTGAT CTTGATGATG CGTTTTCCGA GCAGGTATTC AAGCGCTACC TCAAGCAATT AGATTACCGT CGTAATGTAT TGCTACAAAC AGATCTTGAT ACTTTTGCTG TTTATTCGAA ACAGTTTGAT GACATGCTTA AAAGTGGTGA TTTGACTCCT GCTTATAAGA TGTTCGAACT CGTTCAAAAG CGTCGTTATG ACCGTTTCTC ATATGCATTA TCTCTCTTAG ACAAAGAGAT GGATTTTACT CTTGCTAATG ATAAGTATCA GTTTAATCGT GAAGATGCCG CCTGGCCGAA AGATGAGGCT GAACTCAACG AGTTATGGCG TCAAAGAGTC AAATATGATG CGTTAAACCT TAAATTAACC GGTAAAGAGT GGGATGAAAT TGTTCCCGTT CTTGAGAAGC GCTATAACAA TGCGATTAAG CGCCTTAGTC AGACTAAGAG TGAAGATGTT TTTCAAGGCG TGATGAATGC CTTTTCTCGC ACCGTAGAGC CTCACACCAG TTATCTCTCT CCAAGAAATG CTGAACGTTT CCAGATGGAG ATGAACTTAA GTCTTGAGGG TATTGGTGCC GTATTACAGA TGGATGATGA TTATACCGTC ATCAAGAGTC TGGTTGCTGG CGGGCCCGCA GCAACGAGTG AAAAGTTATC ACCGGAAGAT AAGATTGTCG GTGTTGGCCA GGATGACAAA GAGATTGTTG ATGTCATTGG CTGGCGTCTC GATGATGTTG TCGAGCTGAT TAAAGGCCCT AAGGGCAGTA AAGTCGTTTT ACAGATTTTA CCTAAAAAAG GTGGTTCTTC GGCTAAAACA TTCGAAGTGA CCATAGTAAG AGATAAGATC AGACTCGAAG ATCGTGCAGC TACCTCTGAG GTGATAGAGC CAGATGAAGG TCTCTATGCT AATCGTAAGG TCGGTGTCAT CCAGATCCCA GGCTTCTATA TGGATCTGTC TAAAGATGTG TCTAAAGAGC TGATTAAGCT GAAAAAAGCG CAGGTCGAAG GTGTTATTAT TGATCTGCGG GGCAACGGTG GTGGTGCATT AACCGAGGCT ACACTCTTAA CCGGATTGTT TATCGAGCAA GGTCCGGTTG TACAAATAAG AGATGCCAAT GGTAAGGTCT CGCAAAATCG AGATAATGAC GGCCGTACCA CCTATAGCGG ACCATTAACA GTCATGGTTG ATCGTTATAG TGCTTCTGCC TCTGAAATTT TCGCTGCTGC ACTTCAGGAT TATGACCGTG CGCTGATTGT CGGTGAGTCG ACTTTCGGTA AAGGTACGGT TCAGCAGCAT AAGAGCCTCG GCCGTATCTA TGATATGTAT GAGAAGCCAA TTGGTCACGT TCAGTACACC ATAGCTAAGT TCTACCGTAT CAATGGTGGC AGTACTCAGC TTAAGGGTGT TACACCGGAT ATTTCATTCC CGAGTGCTTT AGAGCCGGGT GAGTATGGTG AAGCTGAGGA AGAGAATGCA TTGCCTTGGG ATAAAGTGCC GGTTGCACAA TATGGCACTC TGGGTGATGT TAGCCCTAAC ATGATCGGTA ACTTGTCTGT TAAGCACGAT TCTCGTATTA AGCAAGATGT TGAGTTTAGC TATATTTACC AAGATATTGC CGAATTTAAG CAGCATCATG ATGAAAAAAC GGTCTCTCTT GTTGAGAGTG AACGTATTGC AGAGCGCGAA GCCAATGACA AGAAGCAGCT CGTTCGTCTT AATGAACGTC GTGTGAGCCA AGGCTTAGAG GTTGTTAAGT CGCTCGATTC AGAAGATACA GAAACTGAAT CGGATGCAGA TGAAGATGAA CTGGTTACAC CGGATGCTTT CCGTGATGAA ACGGTTTATA TCACTCTCGA TATGGTCGAT ATCGAAAGAG TGGCTAAAAA CGAATCAAAG TAA
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Protein sequence | MRKITLAASI ASIFVGFSAW ALTPSIPFSE LPALSQEPQH KVASKRVTGL FTRSHYHRFD LDDAFSEQVF KRYLKQLDYR RNVLLQTDLD TFAVYSKQFD DMLKSGDLTP AYKMFELVQK RRYDRFSYAL SLLDKEMDFT LANDKYQFNR EDAAWPKDEA ELNELWRQRV KYDALNLKLT GKEWDEIVPV LEKRYNNAIK RLSQTKSEDV FQGVMNAFSR TVEPHTSYLS PRNAERFQME MNLSLEGIGA VLQMDDDYTV IKSLVAGGPA ATSEKLSPED KIVGVGQDDK EIVDVIGWRL DDVVELIKGP KGSKVVLQIL PKKGGSSAKT FEVTIVRDKI RLEDRAATSE VIEPDEGLYA NRKVGVIQIP GFYMDLSKDV SKELIKLKKA QVEGVIIDLR GNGGGALTEA TLLTGLFIEQ GPVVQIRDAN GKVSQNRDND GRTTYSGPLT VMVDRYSASA SEIFAAALQD YDRALIVGES TFGKGTVQQH KSLGRIYDMY EKPIGHVQYT IAKFYRINGG STQLKGVTPD ISFPSALEPG EYGEAEEENA LPWDKVPVAQ YGTLGDVSPN MIGNLSVKHD SRIKQDVEFS YIYQDIAEFK QHHDEKTVSL VESERIAERE ANDKKQLVRL NERRVSQGLE VVKSLDSEDT ETESDADEDE LVTPDAFRDE TVYITLDMVD IERVAKNESK
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