Gene Ssed_2483 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2483 
Symbol 
ID5611162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp3020972 
End bp3023044 
Gene Length2073 bp 
Protein Length690 aa 
Translation table11 
GC content44% 
IMG OID640933404 
Productcarboxy-terminal protease 
Protein accessionYP_001474220 
Protein GI157375620 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0793] Periplasmic protease 
TIGRFAM ID[TIGR00225] C-terminal peptidase (prc) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000106803 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0256948 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGAAAAA TTACCCTGGC TGCCTCAATC GCCAGTATTT TTGTAGGATT CTCGGCGTGG 
GCGTTAACCC CATCAATTCC ATTCAGCGAG TTACCCGCAC TATCGCAGGA ACCGCAGCAT
AAAGTAGCCA GTAAGCGCGT TACTGGCCTC TTTACTCGCT CTCACTATCA CAGATTTGAT
CTTGATGATG CGTTTTCCGA GCAGGTATTC AAGCGCTACC TCAAGCAATT AGATTACCGT
CGTAATGTAT TGCTACAAAC AGATCTTGAT ACTTTTGCTG TTTATTCGAA ACAGTTTGAT
GACATGCTTA AAAGTGGTGA TTTGACTCCT GCTTATAAGA TGTTCGAACT CGTTCAAAAG
CGTCGTTATG ACCGTTTCTC ATATGCATTA TCTCTCTTAG ACAAAGAGAT GGATTTTACT
CTTGCTAATG ATAAGTATCA GTTTAATCGT GAAGATGCCG CCTGGCCGAA AGATGAGGCT
GAACTCAACG AGTTATGGCG TCAAAGAGTC AAATATGATG CGTTAAACCT TAAATTAACC
GGTAAAGAGT GGGATGAAAT TGTTCCCGTT CTTGAGAAGC GCTATAACAA TGCGATTAAG
CGCCTTAGTC AGACTAAGAG TGAAGATGTT TTTCAAGGCG TGATGAATGC CTTTTCTCGC
ACCGTAGAGC CTCACACCAG TTATCTCTCT CCAAGAAATG CTGAACGTTT CCAGATGGAG
ATGAACTTAA GTCTTGAGGG TATTGGTGCC GTATTACAGA TGGATGATGA TTATACCGTC
ATCAAGAGTC TGGTTGCTGG CGGGCCCGCA GCAACGAGTG AAAAGTTATC ACCGGAAGAT
AAGATTGTCG GTGTTGGCCA GGATGACAAA GAGATTGTTG ATGTCATTGG CTGGCGTCTC
GATGATGTTG TCGAGCTGAT TAAAGGCCCT AAGGGCAGTA AAGTCGTTTT ACAGATTTTA
CCTAAAAAAG GTGGTTCTTC GGCTAAAACA TTCGAAGTGA CCATAGTAAG AGATAAGATC
AGACTCGAAG ATCGTGCAGC TACCTCTGAG GTGATAGAGC CAGATGAAGG TCTCTATGCT
AATCGTAAGG TCGGTGTCAT CCAGATCCCA GGCTTCTATA TGGATCTGTC TAAAGATGTG
TCTAAAGAGC TGATTAAGCT GAAAAAAGCG CAGGTCGAAG GTGTTATTAT TGATCTGCGG
GGCAACGGTG GTGGTGCATT AACCGAGGCT ACACTCTTAA CCGGATTGTT TATCGAGCAA
GGTCCGGTTG TACAAATAAG AGATGCCAAT GGTAAGGTCT CGCAAAATCG AGATAATGAC
GGCCGTACCA CCTATAGCGG ACCATTAACA GTCATGGTTG ATCGTTATAG TGCTTCTGCC
TCTGAAATTT TCGCTGCTGC ACTTCAGGAT TATGACCGTG CGCTGATTGT CGGTGAGTCG
ACTTTCGGTA AAGGTACGGT TCAGCAGCAT AAGAGCCTCG GCCGTATCTA TGATATGTAT
GAGAAGCCAA TTGGTCACGT TCAGTACACC ATAGCTAAGT TCTACCGTAT CAATGGTGGC
AGTACTCAGC TTAAGGGTGT TACACCGGAT ATTTCATTCC CGAGTGCTTT AGAGCCGGGT
GAGTATGGTG AAGCTGAGGA AGAGAATGCA TTGCCTTGGG ATAAAGTGCC GGTTGCACAA
TATGGCACTC TGGGTGATGT TAGCCCTAAC ATGATCGGTA ACTTGTCTGT TAAGCACGAT
TCTCGTATTA AGCAAGATGT TGAGTTTAGC TATATTTACC AAGATATTGC CGAATTTAAG
CAGCATCATG ATGAAAAAAC GGTCTCTCTT GTTGAGAGTG AACGTATTGC AGAGCGCGAA
GCCAATGACA AGAAGCAGCT CGTTCGTCTT AATGAACGTC GTGTGAGCCA AGGCTTAGAG
GTTGTTAAGT CGCTCGATTC AGAAGATACA GAAACTGAAT CGGATGCAGA TGAAGATGAA
CTGGTTACAC CGGATGCTTT CCGTGATGAA ACGGTTTATA TCACTCTCGA TATGGTCGAT
ATCGAAAGAG TGGCTAAAAA CGAATCAAAG TAA
 
Protein sequence
MRKITLAASI ASIFVGFSAW ALTPSIPFSE LPALSQEPQH KVASKRVTGL FTRSHYHRFD 
LDDAFSEQVF KRYLKQLDYR RNVLLQTDLD TFAVYSKQFD DMLKSGDLTP AYKMFELVQK
RRYDRFSYAL SLLDKEMDFT LANDKYQFNR EDAAWPKDEA ELNELWRQRV KYDALNLKLT
GKEWDEIVPV LEKRYNNAIK RLSQTKSEDV FQGVMNAFSR TVEPHTSYLS PRNAERFQME
MNLSLEGIGA VLQMDDDYTV IKSLVAGGPA ATSEKLSPED KIVGVGQDDK EIVDVIGWRL
DDVVELIKGP KGSKVVLQIL PKKGGSSAKT FEVTIVRDKI RLEDRAATSE VIEPDEGLYA
NRKVGVIQIP GFYMDLSKDV SKELIKLKKA QVEGVIIDLR GNGGGALTEA TLLTGLFIEQ
GPVVQIRDAN GKVSQNRDND GRTTYSGPLT VMVDRYSASA SEIFAAALQD YDRALIVGES
TFGKGTVQQH KSLGRIYDMY EKPIGHVQYT IAKFYRINGG STQLKGVTPD ISFPSALEPG
EYGEAEEENA LPWDKVPVAQ YGTLGDVSPN MIGNLSVKHD SRIKQDVEFS YIYQDIAEFK
QHHDEKTVSL VESERIAERE ANDKKQLVRL NERRVSQGLE VVKSLDSEDT ETESDADEDE
LVTPDAFRDE TVYITLDMVD IERVAKNESK