| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2474 |
|---|
| Symbol | |
|---|
| ID | 5611781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 3003884 |
|---|
| End bp | 3004417 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 640933395 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474211 |
|---|
| Protein GI | 157375611 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.411375 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00395627 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTATTAA TGCCAAAAAG GGATTGGCAA TGGATATATA ACGATGCGTA TGGTTTTTTA
AGCGTTTCGT TAGGCTCAGA TATGGAATTT CTGACCCCTT ATAAATCTAA ATCTTTAATA
CCTGATGCCC AATCGGAATT AGAGTTCAGT GTCGAACACG CTAAATTTTA TATCGACTTC
GTTGAGAGAC TCTCTAAATC TATGAGTGTA TCTGATGCGA CGATGGTGCA ATTAGCGCTT
AATGCGACTG CCGCGCATTT CTTATTAAAG CCTCAGATGC CTAAGTCTTG GTTTTTCGAC
ACGAGTACTA TGTGTGTCTA TAGTGAATTA GCTAAAGTTT TTCAACTTAG ATGTCAGGGC
GTGAACGCAC AGGTCCTCGT GGTTGAAACA AATATTCAAG CGTCACTCGT GATGCTCTTA
TCAAATGAGC TTTCGCTAAA TGGCACTAAG TCATTAATGC AATTTGAGTG TATCAAGGTC
ATGAATGACA GATTGTACCC ATTAAATATC AAGCGACATA TTGTTGCGGC CTGA
|
|---|
| Protein sequence | MLLMPKRDWQ WIYNDAYGFL SVSLGSDMEF LTPYKSKSLI PDAQSELEFS VEHAKFYIDF
VERLSKSMSV SDATMVQLAL NATAAHFLLK PQMPKSWFFD TSTMCVYSEL AKVFQLRCQG
VNAQVLVVET NIQASLVMLL SNELSLNGTK SLMQFECIKV MNDRLYPLNI KRHIVAA
|
|---|
| |