Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2473 |
Symbol | rlmL |
ID | 5610079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3000324 |
End bp | 3002459 |
Gene Length | 2136 bp |
Protein Length | 711 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 640933389 |
Product | 23S rRNA m(2)G2445 methyltransferase |
Protein accession | YP_001474210 |
Protein GI | 157375610 |
COG category | [L] Replication, recombination and repair [R] General function prediction only |
COG ID | [COG0116] Predicted N6-adenine-specific DNA methylase [COG1092] Predicted SAM-dependent methyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00287682 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTTAAATT TCTTTGCTGC GGCTCCTAGG GGCTATGAAT ATGCGTTATC ACTTGAGCTT GCAGACCTCG GTGCTTCTGA AATAAAAGAG AGTGTTGCAG GTGTTTATTT TTCGGCCTCG CTGGAATTAG GATACCGTAT AACGCTATGG TCACGGATCG CTAGCCGTAT AATTCTTGTT ATCCACAAAG GTCCGTGTGA ATCACCCGAG CAGCTATATA ATGCGGCTTA TGGTATCGAT TGGCAGATGG AGTTTAATCA CCGTAGTACA TTCAGCATCG ATTTTCATGG TATGGGTGGC TTTATTAATA ACACCATGTT TGGTGCGCTT AAGATTAAAG ATGCCATCGT TGACCGTTTC CGTGACGATG ACTGCCCAAG ACCTGACGTT GCTCGTGTCG ATGCAGATTT TAGAATCGAT GCTCACTACC GCCGCGGACA GATCACTATC GGTTTGAATT TTTCTGGCCC AGCACTCCAT AAGCGTGGCT ACCGTTCAAC AACGGGTGAG GCACCACTGA AAGAGAACCT GGCTGCGAAC ATGTTGGTTC GTAGTGGTTG GCAAAAGACC CCCGTTACCC TGATGGATCC GTTCTGTGGT AGTGGTACGA TATTGATTGA AGCCGCTATG ATTGCTTGTG ATATGGCGCC CGGACTACAT CGTGAGCGTT TTGGTTTTGA ACATTGGCAC AGACATAATG ACAAAGTATG GCAAGGTTTG TTAGACGAAG CCAAAGCCAG GGCGTCAATA GGCAAAACGC GTTGTACAAC TAAGTTTTAT GGCTCAGACA TAGACTCACG GCTCGTTGCT CTGGCAAAAC GTAATGCCGA AAATGCTGGC GTATTGGATC TGATAGAGTT TGACGTCTCA AATGCATTGA ATGTTAAAGT GCCTGGTGAA TCAGGTTACC TTATCAGTAA CCCGCCTTAT GGTGAGCGAT TAGGTACAGT GACAGCACTT TTACAGCTGT ACTATCAATT AGGTGATAAG TTTAAGGCTG AATTTGGTGG CTGGAATCTC GCTATTCTAA ACAGTGATGT TGAACTCCTG TCAGCATTGA AGCTGAAAGC TGACAAGCAG ATGAAGATGA ATAACGGTGC GCTGGAATGT GCATTTAATC TTTACACTGT TCATGCAGAA AATACACGAC GTGTCGATCC TAGCAAAATC AATCGAGACG GCGATGTCAG TGACATTGCG GTGCCTTTTG CTAACCGGGT TAAAAAGAAT TTTAAGCAGT TGCAAAAGTG GGCTAAGAAA GAGGGCGTCG ATAGCTATCG TATTTATGAT GCCGATCTAC CTGACTACAA AGTTGCCATC GATAAATACC TGGATTACGT TGTGATCCAA GAATATACCG CGCCGGTCGA TATTCCTGAG TCTGTCACTA AACGTCGTTT AACAGACGTT TTGATCACCT TGCCAAGTGC TATTGGTATC GACCCCGAAA ATATTATTTT AAAGACTCGT GAGCGTCAGA AGGGCACTAA TCAGTACGAG AAGATCCAAG CAAATAAACT TGAGCTAATA ACCACTGAGT ACGGCGCTAA ATTTAAGTTA AATCTTAAAG AGTATTTAGA CACGGGCCTT TTCCTGGATC ATCGTCTCAC GCGTAAACTC GTTGGGCAAA AGTCTAAAGA TAAAGATGTA CTGAATTTAT TTGCTTATAC CGGAACTGCA TCAGTGCATG CGGCATTAGG TGGCGCTAAA TCGGTCAAAA CCGTCGATAT GTCAAATACC TATACCAATT GGGCTAAAGA GAATTTTGCC TTAAATGGGT TGAATGATGA CAAATATCAG TTCGTTCAAG CTAACTGCAT GCAGTGGATC AAAACCACTC ATGATAAGTT TGACCTTATA TTTATCGATC CGCCAACGTT TTCCAATTCA AAGCGCATGG AAGATTCTTT CGATGTTCTT CGTGACCATG TTGCCTTGTT ATCGAGTTTA ATTAAGCTGT TGAATCCAGG TGGAGAAATC ATCTTCTCCA ACAATAAGCG TAAGTTCAAA ATGGAAATCG AAGCGTTAGA AGCATTGAAC TTTACCGTTA AAAATATCGA TAACCAGACA TTACCTTTGG ATTTCAAGCG TAATCCACAA ATCCATAATA CCTGGCTGTT GACCCATGCC GAGTAA
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Protein sequence | MLNFFAAAPR GYEYALSLEL ADLGASEIKE SVAGVYFSAS LELGYRITLW SRIASRIILV IHKGPCESPE QLYNAAYGID WQMEFNHRST FSIDFHGMGG FINNTMFGAL KIKDAIVDRF RDDDCPRPDV ARVDADFRID AHYRRGQITI GLNFSGPALH KRGYRSTTGE APLKENLAAN MLVRSGWQKT PVTLMDPFCG SGTILIEAAM IACDMAPGLH RERFGFEHWH RHNDKVWQGL LDEAKARASI GKTRCTTKFY GSDIDSRLVA LAKRNAENAG VLDLIEFDVS NALNVKVPGE SGYLISNPPY GERLGTVTAL LQLYYQLGDK FKAEFGGWNL AILNSDVELL SALKLKADKQ MKMNNGALEC AFNLYTVHAE NTRRVDPSKI NRDGDVSDIA VPFANRVKKN FKQLQKWAKK EGVDSYRIYD ADLPDYKVAI DKYLDYVVIQ EYTAPVDIPE SVTKRRLTDV LITLPSAIGI DPENIILKTR ERQKGTNQYE KIQANKLELI TTEYGAKFKL NLKEYLDTGL FLDHRLTRKL VGQKSKDKDV LNLFAYTGTA SVHAALGGAK SVKTVDMSNT YTNWAKENFA LNGLNDDKYQ FVQANCMQWI KTTHDKFDLI FIDPPTFSNS KRMEDSFDVL RDHVALLSSL IKLLNPGGEI IFSNNKRKFK MEIEALEALN FTVKNIDNQT LPLDFKRNPQ IHNTWLLTHA E
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