| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2473 |
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| Symbol | rlmL |
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| ID | 5610079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3000324 |
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| End bp | 3002459 |
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| Gene Length | 2136 bp |
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| Protein Length | 711 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933389 |
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| Product | 23S rRNA m(2)G2445 methyltransferase |
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| Protein accession | YP_001474210 |
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| Protein GI | 157375610 |
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| COG category | [L] Replication, recombination and repair
[R] General function prediction only |
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| COG ID | [COG0116] Predicted N6-adenine-specific DNA methylase
[COG1092] Predicted SAM-dependent methyltransferases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00287682 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTTAAATT TCTTTGCTGC GGCTCCTAGG GGCTATGAAT ATGCGTTATC ACTTGAGCTT
GCAGACCTCG GTGCTTCTGA AATAAAAGAG AGTGTTGCAG GTGTTTATTT TTCGGCCTCG
CTGGAATTAG GATACCGTAT AACGCTATGG TCACGGATCG CTAGCCGTAT AATTCTTGTT
ATCCACAAAG GTCCGTGTGA ATCACCCGAG CAGCTATATA ATGCGGCTTA TGGTATCGAT
TGGCAGATGG AGTTTAATCA CCGTAGTACA TTCAGCATCG ATTTTCATGG TATGGGTGGC
TTTATTAATA ACACCATGTT TGGTGCGCTT AAGATTAAAG ATGCCATCGT TGACCGTTTC
CGTGACGATG ACTGCCCAAG ACCTGACGTT GCTCGTGTCG ATGCAGATTT TAGAATCGAT
GCTCACTACC GCCGCGGACA GATCACTATC GGTTTGAATT TTTCTGGCCC AGCACTCCAT
AAGCGTGGCT ACCGTTCAAC AACGGGTGAG GCACCACTGA AAGAGAACCT GGCTGCGAAC
ATGTTGGTTC GTAGTGGTTG GCAAAAGACC CCCGTTACCC TGATGGATCC GTTCTGTGGT
AGTGGTACGA TATTGATTGA AGCCGCTATG ATTGCTTGTG ATATGGCGCC CGGACTACAT
CGTGAGCGTT TTGGTTTTGA ACATTGGCAC AGACATAATG ACAAAGTATG GCAAGGTTTG
TTAGACGAAG CCAAAGCCAG GGCGTCAATA GGCAAAACGC GTTGTACAAC TAAGTTTTAT
GGCTCAGACA TAGACTCACG GCTCGTTGCT CTGGCAAAAC GTAATGCCGA AAATGCTGGC
GTATTGGATC TGATAGAGTT TGACGTCTCA AATGCATTGA ATGTTAAAGT GCCTGGTGAA
TCAGGTTACC TTATCAGTAA CCCGCCTTAT GGTGAGCGAT TAGGTACAGT GACAGCACTT
TTACAGCTGT ACTATCAATT AGGTGATAAG TTTAAGGCTG AATTTGGTGG CTGGAATCTC
GCTATTCTAA ACAGTGATGT TGAACTCCTG TCAGCATTGA AGCTGAAAGC TGACAAGCAG
ATGAAGATGA ATAACGGTGC GCTGGAATGT GCATTTAATC TTTACACTGT TCATGCAGAA
AATACACGAC GTGTCGATCC TAGCAAAATC AATCGAGACG GCGATGTCAG TGACATTGCG
GTGCCTTTTG CTAACCGGGT TAAAAAGAAT TTTAAGCAGT TGCAAAAGTG GGCTAAGAAA
GAGGGCGTCG ATAGCTATCG TATTTATGAT GCCGATCTAC CTGACTACAA AGTTGCCATC
GATAAATACC TGGATTACGT TGTGATCCAA GAATATACCG CGCCGGTCGA TATTCCTGAG
TCTGTCACTA AACGTCGTTT AACAGACGTT TTGATCACCT TGCCAAGTGC TATTGGTATC
GACCCCGAAA ATATTATTTT AAAGACTCGT GAGCGTCAGA AGGGCACTAA TCAGTACGAG
AAGATCCAAG CAAATAAACT TGAGCTAATA ACCACTGAGT ACGGCGCTAA ATTTAAGTTA
AATCTTAAAG AGTATTTAGA CACGGGCCTT TTCCTGGATC ATCGTCTCAC GCGTAAACTC
GTTGGGCAAA AGTCTAAAGA TAAAGATGTA CTGAATTTAT TTGCTTATAC CGGAACTGCA
TCAGTGCATG CGGCATTAGG TGGCGCTAAA TCGGTCAAAA CCGTCGATAT GTCAAATACC
TATACCAATT GGGCTAAAGA GAATTTTGCC TTAAATGGGT TGAATGATGA CAAATATCAG
TTCGTTCAAG CTAACTGCAT GCAGTGGATC AAAACCACTC ATGATAAGTT TGACCTTATA
TTTATCGATC CGCCAACGTT TTCCAATTCA AAGCGCATGG AAGATTCTTT CGATGTTCTT
CGTGACCATG TTGCCTTGTT ATCGAGTTTA ATTAAGCTGT TGAATCCAGG TGGAGAAATC
ATCTTCTCCA ACAATAAGCG TAAGTTCAAA ATGGAAATCG AAGCGTTAGA AGCATTGAAC
TTTACCGTTA AAAATATCGA TAACCAGACA TTACCTTTGG ATTTCAAGCG TAATCCACAA
ATCCATAATA CCTGGCTGTT GACCCATGCC GAGTAA
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| Protein sequence | MLNFFAAAPR GYEYALSLEL ADLGASEIKE SVAGVYFSAS LELGYRITLW SRIASRIILV
IHKGPCESPE QLYNAAYGID WQMEFNHRST FSIDFHGMGG FINNTMFGAL KIKDAIVDRF
RDDDCPRPDV ARVDADFRID AHYRRGQITI GLNFSGPALH KRGYRSTTGE APLKENLAAN
MLVRSGWQKT PVTLMDPFCG SGTILIEAAM IACDMAPGLH RERFGFEHWH RHNDKVWQGL
LDEAKARASI GKTRCTTKFY GSDIDSRLVA LAKRNAENAG VLDLIEFDVS NALNVKVPGE
SGYLISNPPY GERLGTVTAL LQLYYQLGDK FKAEFGGWNL AILNSDVELL SALKLKADKQ
MKMNNGALEC AFNLYTVHAE NTRRVDPSKI NRDGDVSDIA VPFANRVKKN FKQLQKWAKK
EGVDSYRIYD ADLPDYKVAI DKYLDYVVIQ EYTAPVDIPE SVTKRRLTDV LITLPSAIGI
DPENIILKTR ERQKGTNQYE KIQANKLELI TTEYGAKFKL NLKEYLDTGL FLDHRLTRKL
VGQKSKDKDV LNLFAYTGTA SVHAALGGAK SVKTVDMSNT YTNWAKENFA LNGLNDDKYQ
FVQANCMQWI KTTHDKFDLI FIDPPTFSNS KRMEDSFDVL RDHVALLSSL IKLLNPGGEI
IFSNNKRKFK MEIEALEALN FTVKNIDNQT LPLDFKRNPQ IHNTWLLTHA E
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