| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2467 |
|---|
| Symbol | |
|---|
| ID | 5609651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2993525 |
|---|
| End bp | 2995267 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640933383 |
|---|
| Product | ATP-dependent protease |
|---|
| Protein accession | YP_001474204 |
|---|
| Protein GI | 157375604 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1067] Predicted ATP-dependent protease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00344984 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0156105 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAA ACGTCATCCC AGTTTCAGCA TTGTCACCCC ATCATAAAAT TCCAACTCTC
TCTGAAATTA AACATAATGA ACAAGGTTTA TTATTAGGTC AGGAAAGAGT CATCGATGCA
TTTGAGCTAC TGACAAGAAC ATCAAATCAG CATATGTACC TTGCTGATTT GCCGGGGATA
GACAGGTGTG AATTCATCAA ATCACTCACA CTTAACTTGG GTGCTCAAGA AGACCAATAT
TTGCATAAAG CAATAAACAA CAAGCAGTTA ACCTTTGATT GGAAAAACGA CGACTCAGCC
GCTCTAGGGG ATATTTTCTC AACCAAAAAT CAATCCTATC AATACCTTTC CGGTAACATT
AAACGCGCAG ATCTCATCGG GAGACTCGCT CAAAGCAATA TAGAAGCGGG TAATAATAAG
ACTCAATATA TTCCCGGGGC GCTCGCACAA TGTCACTATC TATTTATCTG CGCCGAATCA
CTCTGGAAAC GTGAAGGATT ATGGGATCTC CTTTTAGAAA TACTGACCCA TAGACAGTAC
CATGTACATT CCACTCTCCC AGCTCTGCCT CTTAACTGTA AAATAGTACT TGTCGGCTCC
AGTACACAAT TCAGTGTCTG CTGGGTTGAA GAGGCACTGT TTTCATTACA TTTCCCGTTA
CTCGGAGAGA TGGTTAACGA ACTCGATCTA GGCAAACATT CTGAAGCCGA TTATGTATGC
TGGTTATTAG CCGTTGCTGC CGGTGTAGGT GCCACCCTGT CTCAATCCGC CCTTGTTCAA
CTATTCTCAT ACAGTGCCCG ATTAGCCGAC CATCAGCAAA GGCTGTCACT ACTCTCGTCG
CAAATTGGAC ACCTGTTAGC TCAGGCTAAA GCTTATTCCG GGCAAGAGGA GCTCACCGGT
GAATCCATTA TTCATGCGTT GAAAAAACAT CAGAGCAGGC ATAATGCATC TGAAATGTTA
TCGGCTCAAA ATTTTGACGA TAAATTTATT AACTTACCCA CAGATAAGTT TATGGTCGGT
CAAATAAACG GCCTCACTGT ACTGGAGACC GTCGAGTACA GTTATGGTGA GCCGGCAAGG
ATCACAGCTT CTGTCCATTA TGGTGATGGT GAGGTTGCCG ATATCGAAAG AAAATCTGAG
CTAGGTGGCA ATATTCATGC GAAGGGTATG ATGATCCTCT CCTCTTGTCT CTACAGGATC
TTCGGTAAAG ATGCACCTCT GCACTTGAAT GCAAACATCG TCTTTGAGCA ATCATATCAA
GAGATCGATG GTGACAGTGC TTCGCTTGCC GAGTATTGCT GCCTGATTTC AGCTATTACT
GAAAAACCCA TCGATCAAGG TATTGCTGTA ACCGGAGCAC TCGATCAATT TGGAAGTGTG
CAAGCCATCG GTGGCGTTAA TGAGAAAATT GAGGGCTTCT TTAATCTATG TTCACGTCGT
GGCTTAACCG GTACCCAAGG TGTCATCATC CCAAAATCGA ATACTCAACA ACTTAACCTT
AGCCCACAGT TGATAGAAGC CATTACATCG GGTGAGTTTC ACCTGTATGG AATTGAACAT
ATTGATGAAG CAGTTGAACA ACTAATGAAT ATCAGCGCGG GTATTGCAGA TAAAGATAAT
AACTTCCCGG AAGATTCTCT ATATGGATTA GTTCAGGGCC GTCTCGCCGG ATTAGCGGGT
TATCAGGATG AAGAGAAAAG TTTTTTTGCG AAGTTAGTCG AAAAATTCAG CTTTTCCAGC
TGA
|
|---|
| Protein sequence | MNSNVIPVSA LSPHHKIPTL SEIKHNEQGL LLGQERVIDA FELLTRTSNQ HMYLADLPGI
DRCEFIKSLT LNLGAQEDQY LHKAINNKQL TFDWKNDDSA ALGDIFSTKN QSYQYLSGNI
KRADLIGRLA QSNIEAGNNK TQYIPGALAQ CHYLFICAES LWKREGLWDL LLEILTHRQY
HVHSTLPALP LNCKIVLVGS STQFSVCWVE EALFSLHFPL LGEMVNELDL GKHSEADYVC
WLLAVAAGVG ATLSQSALVQ LFSYSARLAD HQQRLSLLSS QIGHLLAQAK AYSGQEELTG
ESIIHALKKH QSRHNASEML SAQNFDDKFI NLPTDKFMVG QINGLTVLET VEYSYGEPAR
ITASVHYGDG EVADIERKSE LGGNIHAKGM MILSSCLYRI FGKDAPLHLN ANIVFEQSYQ
EIDGDSASLA EYCCLISAIT EKPIDQGIAV TGALDQFGSV QAIGGVNEKI EGFFNLCSRR
GLTGTQGVII PKSNTQQLNL SPQLIEAITS GEFHLYGIEH IDEAVEQLMN ISAGIADKDN
NFPEDSLYGL VQGRLAGLAG YQDEEKSFFA KLVEKFSFSS
|
|---|
| |