Gene Ssed_2455 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2455 
Symbol 
ID5609618 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2980685 
End bp2981329 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content45% 
IMG OID640933369 
Productresponse regulator 
Protein accessionYP_001474192 
Protein GI157375592 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.140183 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.431169 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGATTTCAG TATATTTGGT TGATGATCAT GAGTTAGTTC GAACGGGGAT CCGTCGTATC 
CTTGAAGATG AACGTGGAAT AAAAGTGACG GGGGAAGCGG GGGATGGTGA AACTGCTGTT
CACTGGAGCC GTAGTAACGA AGCCGATGTT ATCTTGATGG ACATGAATAT GCCCGGTATC
GGCGGTCTGG AAGCCACTCG AAAAATACTT CGTTATCAAC CTCATGCTAA AATTATTGTG
TTGACTATCC ATACCGAAGA TCCGTTTCCT ACAAAAGTGA TGCAAGCTGG AGCATCTGGC
TACCTTACAA AGGGAGCGAC GCCTCCGGAA GTGCTTCAAG CTATTCGACA AGTTGCACAC
GGCCAAAGGT ACCTTTCACC TGAGATTGCG CAACAGATGG CGTTAAGCCA GTTTAATCAA
ACGGAAGAGA ATCCTTTTAA AACACTTTCG GAGCGAGAGT TGCAGATCAT GATGATGATC
ACCAGCGGTG AGAAGGTCAA TGATATCTCC GAGCAGCTTA ATTTAAGTCC CAAGACAGTG
AATAGCTACC GATATAGGTT GTTTGCAAAA CTTGGTATCA GTGGGGATGT AGAACTGACT
CGACTGGCCA TTCGTTATAA AATGTTGGAT ACCGGTCAGT TTTAG
 
Protein sequence
MISVYLVDDH ELVRTGIRRI LEDERGIKVT GEAGDGETAV HWSRSNEADV ILMDMNMPGI 
GGLEATRKIL RYQPHAKIIV LTIHTEDPFP TKVMQAGASG YLTKGATPPE VLQAIRQVAH
GQRYLSPEIA QQMALSQFNQ TEENPFKTLS ERELQIMMMI TSGEKVNDIS EQLNLSPKTV
NSYRYRLFAK LGISGDVELT RLAIRYKMLD TGQF