| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2429 |
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| Symbol | |
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| ID | 5613774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2952175 |
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| End bp | 2953296 |
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| Gene Length | 1122 bp |
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| Protein Length | 373 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933340 |
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| Product | NlpB/DapX family lipoprotein |
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| Protein accession | YP_001474166 |
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| Protein GI | 157375566 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3317] Uncharacterized lipoprotein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000329618 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000381817 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTTAAAGC AAGTGACTCC TTTAGTACTC ATCGCTGCCG TTACGGCCTG TAGTTCACCG
GTGGAACGCA GACAAGCGAA TGGTGGGGAC GAGTACACCA ATGTGAAAGT ACAACCCGCT
TTGACCATTC CAGAAGGGTT AAATGCTCCT ACTTATAGTA AAGAATTTGA TATTCCGAAG
CTTAATTCGA AGGCCGATGA CAAATTGGTT GGTAAGCTTT TGGATATCAG ACCGCCATTG
CAAGTGTTAC CCATGGCGGA AGGCACTCAT GTAGAAGAGA GTGGTGATAG CATCAAGATC
GTTGTCGAGT CCATCGATAA AGATGTCGAT CTGAAACAAG AACTCTATAC CGTGTTGAAT
AACTATTTGG CGAGTCAGTC GATTAATGTT CTCAGTGAAG ATTATGACAA AGGGCTAATT
GAAACGGATT GGATTGAAAA CGAGGAAGTG ATCGACTCCA GTTTCTGGGG CAGTGATGAG
ATCTATCAAC TTCGTCAACG CTATCAGTTT GAGGTGGATG TTCGTCCCCA TGGACGCAGT
GGTAACATAG CCATAAACTT GATTGACCAT GAAGAAAGTT TTGATGGTAA GCAGCAAAAT
ATCCTCCTGA GTGGCGAAGA TAAACGTCGT TATACCATTG ATATGTTGAA CAATGCTGTA
GCTTACATGA GTGTAAAACG CTCTCAGGCT ATCAAGGCCA AACGTCTCAG AGAGAGTCTG
GGCATCGACG TTAATGTCGT AAAAGGTGCA CCTGCAACTG TTGAAGGTGA GGCGGCTGAA
CAGTCTTATT GGTTAGCCGA TGCGCCGTTC GAACGTACCT GGGATAGATT ACGTATCGTA
TTACCGGAAA TGGGTTTCGA AATTGTTGAT ATGGACAGTA ATAAAGGCCT TTATTACATC
AATGTTAATG ACGATTCAGG TTTCTGGAGC TCACTATGGA GTGAAAAGAA ACTCCCTGTT
GAGGAAGGTT CTTATCGAAT GTTACTAAAA GAGGGTGACA GCGAAGATAA GACGCGCATC
TACCTCCACA ACTCAGAAGA TAAACCCTTG GATAATGTAG TGGTCGAAGC TGTGTATGAA
GGCTTCTCTG AGCTTATGCA GGAAGATCGT AAAATTCGAT AG
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| Protein sequence | MLKQVTPLVL IAAVTACSSP VERRQANGGD EYTNVKVQPA LTIPEGLNAP TYSKEFDIPK
LNSKADDKLV GKLLDIRPPL QVLPMAEGTH VEESGDSIKI VVESIDKDVD LKQELYTVLN
NYLASQSINV LSEDYDKGLI ETDWIENEEV IDSSFWGSDE IYQLRQRYQF EVDVRPHGRS
GNIAINLIDH EESFDGKQQN ILLSGEDKRR YTIDMLNNAV AYMSVKRSQA IKAKRLRESL
GIDVNVVKGA PATVEGEAAE QSYWLADAPF ERTWDRLRIV LPEMGFEIVD MDSNKGLYYI
NVNDDSGFWS SLWSEKKLPV EEGSYRMLLK EGDSEDKTRI YLHNSEDKPL DNVVVEAVYE
GFSELMQEDR KIR
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