| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2422 |
|---|
| Symbol | |
|---|
| ID | 5609833 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2943150 |
|---|
| End bp | 2944334 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640933333 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_001474159 |
|---|
| Protein GI | 157375559 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.252626 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000135127 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGGTT TTGAATTATT TGGTCCTGAA GAGAAGCAGG AAGTTGCAGA TGTAATGGAG
AACGGTTTCA CCTTCCGTTA TAACTTCGAT CATATGCGTA ATGATCGTTG GAAGACGCGT
GAAATGGAGC AGTTGTTGTG TGAAAAGATG AATGTTAATC ACGCGCACCT TCTATCAAGC
GGTACTGCAG CTCTTCAAAC GGCACTTGCC GCTGCAGGTA TTGGTGCCGG AGACGAAGTC
ATCGTTCCTC CTTTCACTTT CGTCGCCTCT GTAGAAGCCG TATTTATGGC TGGTGCGGTG
CCCGTTTTTG CTGAGATCGA TGAGACTCTC TGTTTGTCTC CAGAAGGTAT TGAAGCCGCC
ATCACACCAC GTACTAAGGC GGTTAACTTA GTTCATATGT GTGGTTCTAT GGGCAAGCTT
GACGAGATTA AGGCCGTATG TGAAAAACAT GACCTTGTTC TTTTAGAAGA TGCCTGTCAG
GCAATTGGTG GCACCTATAA AGGTCAGGCA TTGGGTACTA TCGGTGACGT AGGTTGCTAC
TCATTCGATT CGGTAAAAAC CATCACCTGT GGTGAAGGCG GCGCTGTGAT CACGAACAGC
GAAACCATCT ACAAAAACTC TCACATGTTC TCAGACCATG GTCATGACCA TGTTGGTAAC
GATCGTGGCG CCGAAGATCA CCCCATTATG GGCTTGAACT TCCGTATCTC TGAGATGAAC
TCAGCAATGG GTCTTGCTCA ACTGCGTAAA CTCGATACCA TTATCGATAT TCAACGTAAA
AACAAAAACA CCATCAAAAA TGGCATAAAA GATATCGCTG AACTCTCTTT CCGCGAACTA
CCAGATGCCG AAGGTGATTC AGCGGGTTTC CTGACCTTTA TGATGCCAAC CGAAGAACGT
ACCATAGAGA TCAACAAGAA GCTGGCTGAA AATGGCGTCG ACGGTTGCTT CTACTGGTAT
GTAAACAACT GGCATTACCT AAGTAATTGG AAACACATTC AAGAACTCAA GTCTTGCTCT
GCCCTGCCAA TCACATTAAT TGAAGACCGT CCTGACTATA CTAACGTGTC GGTACCAAAA
TCTGATGCGA TCATGAGCCG AACTATCTCT ATGTTGATCA AGCTGTCTTG GACTGAAGAA
GAGATCGCAC AGCGTATTGA GAATATTAAG AAAGCCTTTG CTTAA
|
|---|
| Protein sequence | MPGFELFGPE EKQEVADVME NGFTFRYNFD HMRNDRWKTR EMEQLLCEKM NVNHAHLLSS
GTAALQTALA AAGIGAGDEV IVPPFTFVAS VEAVFMAGAV PVFAEIDETL CLSPEGIEAA
ITPRTKAVNL VHMCGSMGKL DEIKAVCEKH DLVLLEDACQ AIGGTYKGQA LGTIGDVGCY
SFDSVKTITC GEGGAVITNS ETIYKNSHMF SDHGHDHVGN DRGAEDHPIM GLNFRISEMN
SAMGLAQLRK LDTIIDIQRK NKNTIKNGIK DIAELSFREL PDAEGDSAGF LTFMMPTEER
TIEINKKLAE NGVDGCFYWY VNNWHYLSNW KHIQELKSCS ALPITLIEDR PDYTNVSVPK
SDAIMSRTIS MLIKLSWTEE EIAQRIENIK KAFA
|
|---|
| |