Gene Ssed_2421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2421 
Symbol 
ID5609832 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2942233 
End bp2942847 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content45% 
IMG OID640933332 
Productcarbonate dehydratase 
Protein accessionYP_001474158 
Protein GI157375558 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0288] Carbonic anhydrase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.658807 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000897123 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAAAATAC TAACTCCCCT TTTTGAGAAT AATCGCCGCT GGGCTGAACG TATCGTTAAA 
GAGACACCTG ATTTTTTTGA ACAGCTCGCG ACTCAACAAA ACCCTGAATA TCTCTGGATC
GGTTGCTCAG ACAGCCGCGT TCCTTCCAAC CAGATCATCG ACTTAATGCC CGGTGAAGTG
TTTGTTCATC GAAATATTGC CAACATGGTG ATCCACACAG ATTTAAACTG CTTATCGGTA
CTGCAATATG CCGTAGAAGT CCTCAAAGTT AAACATATCA TGGTGGTTGG ACACTATGGC
TGTGGTGGAG TTAAGGCTTC TATGGGGAAC GAACGACTCG GGCTTATCGA CAACTGGCTC
GGCCATATCA GAGATATTCA CCGCCTTCAC AGTAATGAGC TGGATAAGCT TGAGGGTGAA
GAGAAGTTTG ATCGTCTCTG CGAGCTAAAC GTCATCGAAC AGGTCGGCAA TGTCTGTAGC
ACCAATATAG TACAAGATGC CTGGGCCAGA GGGGAGAATG TATCCGTTCA TGGCTGGATC
TATAGTATCG AGAACGGACT ACTCTCAGAT CTAGATGTGA CTGTCGATAA CGAAAAATTT
AAACCCCAAG TTTAG
 
Protein sequence
MKILTPLFEN NRRWAERIVK ETPDFFEQLA TQQNPEYLWI GCSDSRVPSN QIIDLMPGEV 
FVHRNIANMV IHTDLNCLSV LQYAVEVLKV KHIMVVGHYG CGGVKASMGN ERLGLIDNWL
GHIRDIHRLH SNELDKLEGE EKFDRLCELN VIEQVGNVCS TNIVQDAWAR GENVSVHGWI
YSIENGLLSD LDVTVDNEKF KPQV