| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2420 |
|---|
| Symbol | |
|---|
| ID | 5613730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2941189 |
|---|
| End bp | 2942025 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640933331 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_001474157 |
|---|
| Protein GI | 157375557 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0232728 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000010023 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTT CTTCCTATCG AAATCAGATC ACAGTAGATA ACAAATGTCT TAATTATTTA
GATATCGGCG ATGGCCCGGT GCTTTTATTC GGTCATAGTT ATCTTTGGGA CTCACAGATG
TGGGCGCCTC AACTCGCTCA CCTTTCCCGC CATTATCGTT GTATTGTTCC CGATCTATGG
GGTCATGGTC ATTCAGACCC TATTCCTGAC AGCACGCACT CCCTACAGCA TATTGCCGAT
CAGATGCTCA CTCTCATGGA TACCTTGAAG GTAGAGACGT TCTCGGTCAT TGGCTTGTCT
GTAGGAGGCA TGTGGGGCGC GGAACTGGCC TTAAAAGCAC CTACACGAGT CACCACGCTC
GTGATGATGG GCTGCTTTAT TGGCTTTGAG CCCGAAGTAT CGCGCACCAA GTACTACAAT
ATGCTCGATA TCATTAAGGC CAGTCAGGGT GTTCCCGCGC CTTTAATCGA ACAGATCGCA
CCACTGTTTT TTGCTAAAAA TGCGGCTCAA AATACCCCCG AATTGTTTGC TCACTTCAAA
CAATCTCTTG CAGAGTTAAA ACCTGAACTC GTCGAAACAC TATTTAGATT AGGCAAGATC
ATCTTCGGCA GACGAGATAC CATGGAAGAG GTAGAAAAGC TCACCCTTCC CTGTTTAATT
ATGACAGGTC TCGAAGACAG TGTACGTCCG GTTCTCGAGG GATACTTGAT GCATGACGCC
ATAGATGGCA GTGAATATAT TCATATTCCT AATGCGGGGC ATATCTCTAG CCTGGAGCAG
CCAGAGTTTA TCAATGAACA GCTCACTAAT TTTCTAAATA AACATCTCAA GCCTTAA
|
|---|
| Protein sequence | MNFSSYRNQI TVDNKCLNYL DIGDGPVLLF GHSYLWDSQM WAPQLAHLSR HYRCIVPDLW
GHGHSDPIPD STHSLQHIAD QMLTLMDTLK VETFSVIGLS VGGMWGAELA LKAPTRVTTL
VMMGCFIGFE PEVSRTKYYN MLDIIKASQG VPAPLIEQIA PLFFAKNAAQ NTPELFAHFK
QSLAELKPEL VETLFRLGKI IFGRRDTMEE VEKLTLPCLI MTGLEDSVRP VLEGYLMHDA
IDGSEYIHIP NAGHISSLEQ PEFINEQLTN FLNKHLKP
|
|---|
| |