Gene Ssed_2416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2416 
Symbol 
ID5609731 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2938108 
End bp2938617 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content47% 
IMG OID640933327 
ProductPTS system glucose-specific transporter subunit 
Protein accessionYP_001474153 
Protein GI157375553 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2190] Phosphotransferase system IIA components 
TIGRFAM ID[TIGR00830] PTS system, glucose subfamily, IIA component 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.30633 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value9.35977e-07 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGGATTTT TAAGCCGTAT CAGACGTTTA ATGTCGGGGC AAACCAACCT GGTTGGCGGA 
ATTGATGTTT TTGCTCCCGT TTCAGGCGAC ATTGTCGCCA TTGAGAAGGT TCCCGACGTC
GTCTTTGCCG AAAAAATTGT CGGTGATGGC CTGGCCATTC AACCAAAAGG TCACTTGATT
GTCGCTCCCA TCGACGGAAC TATCGGGAAA ATATTCGAAA CAAATCATGC GTTCAGCATC
GAATCACCTC AAGGGCTGGA ACTCTTTGTC CATTTCGGTG TAGGCACAGT AGAGCTGCGT
GGTAATGGAT TTAAACGTCT CGCCGAAGAG GGACAAGTTG TTAAGGTGGG TGAGCCTATT
CTTGAATTCG ATCTGGGATA CCTTAAAGAG CAAGTAGAGA GTCTGCTCAC CCCTGTGGTA
CTGGCTAATA TGGAAGATGT CCGCTCATTG GATAAACGTC ATGGTTCCAT AGAAGCAGGT
AAAGACGTTA TTTTCTCGGT AGAGCTCTGA
 
Protein sequence
MGFLSRIRRL MSGQTNLVGG IDVFAPVSGD IVAIEKVPDV VFAEKIVGDG LAIQPKGHLI 
VAPIDGTIGK IFETNHAFSI ESPQGLELFV HFGVGTVELR GNGFKRLAEE GQVVKVGEPI
LEFDLGYLKE QVESLLTPVV LANMEDVRSL DKRHGSIEAG KDVIFSVEL