| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2372 |
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| Symbol | |
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| ID | 5611424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2886343 |
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| End bp | 2887167 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640933283 |
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| Product | Flp pilus assembly protein CpaB-like protein |
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| Protein accession | YP_001474109 |
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| Protein GI | 157375509 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3745] Flp pilus assembly protein CpaB |
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| TIGRFAM ID | [TIGR03177] Flp pilus assembly protein CpaB |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.267894 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.976652 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAATA AAACCATATT ATTCGTCCTA TTGTCGTTAA TATTTGGCGT TGCAGCCGTT
TTCCTTGCAC AAAGTTGGTT GAAAACTAAT ACCGAGGCCG TTAATCCGCA AGTTTCAACG
AGTGTGATCA CTATGGCCAC ATTAGTTCCG CTTGGAACAA TACTTGAGCG AAAACATCTT
ATACTTACTC CTATGCCAAA TACCGTTATC CCGGAAACTG CGATTAAAAC GTTTGAAGGT
GCAGAGGGTA TGGTCGTTAA GCAGAACCTG TATGCGGGAG AGGTGCTTCG CAGTGAAAGG
ATAACTGTAA AAGGTGAGGG AAGCACATTA GCCAGCTTGA TATCTCCGCA AATGCGCGCC
GTCACCATTA GGGTTAACGA TGTGGTTGGT GTTGCAGGTT TCTTGCTCCC GGGTAATCGT
GTTGATGTAC TCAACCTGTT TAAAAGAGGG GGGCGTCTGC AAACTGATGT TGTATTGGCG
AACGTTAAAA TTCTTGCAAT CGATCAACGC TCTTCAAATG ATGAAAATAA GCCTAAATTG
GTTCGTGCAG TGACTCTCGA ACTCAATTTA GAGCAGGCTG AAGTGTTAAT GATCGCAAAA
GGGCGTGGCA AGCTTCAATT AGCGCTAAGA AATCCGAATG ATTCAACAAA AGTTGAACTA
GCATTAATTA ATGAGGCTAA AGATACAATC GATAGCGAGC CCACGCCAGC TGTCAGGCCT
ATGCCTGTCG TATCTAAAGA CATAATTCAA GTTTCAACTA AAACGAATTC AAAAGTCTAT
CTGCTTAAAG GAATGCAAGA GCAGGTAATT AAAGTGAGCA ATTAG
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| Protein sequence | MNNKTILFVL LSLIFGVAAV FLAQSWLKTN TEAVNPQVST SVITMATLVP LGTILERKHL
ILTPMPNTVI PETAIKTFEG AEGMVVKQNL YAGEVLRSER ITVKGEGSTL ASLISPQMRA
VTIRVNDVVG VAGFLLPGNR VDVLNLFKRG GRLQTDVVLA NVKILAIDQR SSNDENKPKL
VRAVTLELNL EQAEVLMIAK GRGKLQLALR NPNDSTKVEL ALINEAKDTI DSEPTPAVRP
MPVVSKDIIQ VSTKTNSKVY LLKGMQEQVI KVSN
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