| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2358 |
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| Symbol | |
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| ID | 5612969 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2870484 |
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| End bp | 2872022 |
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| Gene Length | 1539 bp |
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| Protein Length | 512 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933269 |
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| Product | tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit |
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| Protein accession | YP_001474095 |
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| Protein GI | 157375495 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
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| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00973196 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.00100585 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGTTG AAAAGGAAGT GTCTGTGACT AAAGAAGTTA TCATAAAGCA AGCCGATCTA
ATCGAGAGCG TTGCCGATTC CCTACAATAT ATCTCCTATT ATCACCCCAA AGATTTTGTC
GATGCTATGT CAGAAGCCTA TGACAGAGAA GAAAGTGCAG CCGCAAAAGA TGCCATTGCA
CAGATCTTAA TTAACTCTCG TATGTCGGCA GAAGGAAAGC GTCCTCTGTG CCAGGACACC
GGTATCGTTA CCTGTTTTGT TAAAGTGGGT ATGGGTGTTA AGTGGGATAA GACTGATATG
ACGGTTCAGC AGATGGTCGA CGAAGGCGTC AGACGTGCGT ATCAGAACCC GGATAACCCA
TTAAGAGCCT CAATCGTTTC AGACCCTGCC GGGGCGCGTA AGAATACCAA GGATAATACC
CCCTCTGTCG TTCATATCGA TATGGTGCCC GGGGATCATA TTGAGGTTGC AATCGCGGCT
AAGGGCGGCG GTTCTGAAAA TAAATCTAAG ATGGCGATGC TCAACCCTTC AGATGATGTT
GCTGCATGGG TTGAGAAGAC ACTGCCGACG ATGGGCGCGG GCTGGTGCCC ACCAGGAATG
CTGGGTATTG GCATCGGCGG AACCGCAGAG AAAGCGGCGG TACTCGCTAA AGAGTCTCTG
ATGGATCCCG TCGACATTCA TGAACTACAG GCAAAGGGCG CCGAAACGGC CGAAGAGAAG
TTGCGTCTGG ATATCTTCGA GCGCTCTAAT AAGTTAGGCA TCGGTGCTCA GGGCCTCGGC
GGTTTGACCA CGGTTCTGGA TGTAAAGATT AAATCGGTAC CGACACACGC AGCCTCTAAG
CCTGTTGTGA TGATCCCGAA CTGCGCAGCC ACACGTCATG TTCATTTTCA CTTAGATGGA
ACGGGTCCTG CAGTATTAAC GCCTCCATCG TTAGAAGATT GGCCTGTGAT CACCCGTGAA
GCGGGTGAGA ACACTCACCA TGTCGATCTC AACAGTGTGA CACAAGCCGA TATTGAAACG
TGGAAGAGTG GCGATACCTT GCTACTTAAC GGCAAGATGT TAACCGGCCG TGATGCTGCC
CATAAGCGTA TTCAAACCCT AATTGAAAGC GGTGAAGGTC TGCCTGAAGG CGTCGATTTT
ACCGGTAAGT TTATCTATTA CGTAGGGCCT GTGGATCCTG TCGGTGATGA AGTTGTGGGC
CCTGCGGGTC CAACGACGGC AACGCGTATG GATAAGTTCA CCGATATGAT GCTGGAGAAA
ACGGGCCTGA TGGGGATGAT AGGTAAAGCC GAGCGGGGAC CTGCAACGGT TGCATCCATC
AAGAAGAATA AAGCGGTTTA CCTGATGGCT GTGGGTGGCG CCGCCTATCT GGTATCGAAA
GCGATTAAAA CCTCCCGTGT TGTCGCATTT GCCGACTTAG GTATGGAAGC TATCTATGAG
TTTGACGTTA AAGATATGCC GGTTACTGTG GCTGTAGACT CCAATGGGGT CAACGCTCAT
GAGACTGGCC CGGCTATCTG GAAACTTAAA CTCAGTTAA
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| Protein sequence | MSVEKEVSVT KEVIIKQADL IESVADSLQY ISYYHPKDFV DAMSEAYDRE ESAAAKDAIA
QILINSRMSA EGKRPLCQDT GIVTCFVKVG MGVKWDKTDM TVQQMVDEGV RRAYQNPDNP
LRASIVSDPA GARKNTKDNT PSVVHIDMVP GDHIEVAIAA KGGGSENKSK MAMLNPSDDV
AAWVEKTLPT MGAGWCPPGM LGIGIGGTAE KAAVLAKESL MDPVDIHELQ AKGAETAEEK
LRLDIFERSN KLGIGAQGLG GLTTVLDVKI KSVPTHAASK PVVMIPNCAA TRHVHFHLDG
TGPAVLTPPS LEDWPVITRE AGENTHHVDL NSVTQADIET WKSGDTLLLN GKMLTGRDAA
HKRIQTLIES GEGLPEGVDF TGKFIYYVGP VDPVGDEVVG PAGPTTATRM DKFTDMMLEK
TGLMGMIGKA ERGPATVASI KKNKAVYLMA VGGAAYLVSK AIKTSRVVAF ADLGMEAIYE
FDVKDMPVTV AVDSNGVNAH ETGPAIWKLK LS
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