| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2352 |
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| Symbol | |
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| ID | 5611364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2862534 |
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| End bp | 2863478 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933263 |
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| Product | transcriptional regulator, LysR family protein |
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| Protein accession | YP_001474089 |
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| Protein GI | 157375489 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000117377 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00000015924 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAATATAT CTCGTATTGA CCTGAATTTA TTGGTTTATT TTGATGTTTT ACTTCGTGAA
CTAAATGTTA CTCGGGCCGC AGATCAGCTG GGTATCAGCC AACCAGCGAT GAGTAACGGC
CTGAAAAGAT TGCGTGTTCT ATTTGATGAT CCCCTGTTAA TCAGAACCAG CAAAGGTATG
ACCCCGACTG AGCGGGCATC GGAGCTAAAA CCTGAGATCC GCGAGTTGCT GGTGGGCCTG
GAGAAGGCGG TACAACCCAA AGCCAAGTTC AACCCTTATG AAAGTGAGAA GGTGTTCAGA
ATGATGGCCT CCGATTACGC CGAAGCCACC CTGATCCCAC TTCTTATAGC CAGATTACGT
AATGAAGCGC CGAAGGTGAT CCTTGATATC ATGACACCCA GCGATGTTAA CTTTCCAGAT
GTTGAGCAAG GAAGAGTCGA TATGGTGATC AACCGTTTCG ACAGTATCCC GCAATCTTTT
CACCAAAAAG TACTGTGGAA AGACACATTC AGCTGTTTAA TCAACAAAAA ACATCCGGTA
CTGAAAAACT TTAATCTTGA AAGCTATCTG GATGCGCATC ATGTTTGGGT AAGTAAAACC
GGGATGGGGG TTGGTGTTGG TATGGATCCC GATGATGTTC AGCGCTTAGG TTGGGTCGAT
GAAGCACTGG CTAGATTAAA TGCTAAACGC AGGATCACCG TATTTACCCG ACATTATCAA
GCGGCGAGTT CATTGGCTGA ACGTCAAGAC CTGATAGCGA CAGTCCCCAG TAAGATGGCG
AGACTACAAC AAGATAATAG TAGGGTAAGT ATCGTTCCTC CACCTTTCGA TATACCTCCT
ATAGAGTTGA CAATGGCATG GAGTCCGCTG TTGCAGCACA ACCCTGCTCA CAGGTGGATG
CGAGAGCTTA TCACCGAAAC CGCACGCATC ATCGATAGGT TCTGA
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| Protein sequence | MNISRIDLNL LVYFDVLLRE LNVTRAADQL GISQPAMSNG LKRLRVLFDD PLLIRTSKGM
TPTERASELK PEIRELLVGL EKAVQPKAKF NPYESEKVFR MMASDYAEAT LIPLLIARLR
NEAPKVILDI MTPSDVNFPD VEQGRVDMVI NRFDSIPQSF HQKVLWKDTF SCLINKKHPV
LKNFNLESYL DAHHVWVSKT GMGVGVGMDP DDVQRLGWVD EALARLNAKR RITVFTRHYQ
AASSLAERQD LIATVPSKMA RLQQDNSRVS IVPPPFDIPP IELTMAWSPL LQHNPAHRWM
RELITETARI IDRF
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