| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2340 |
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| Symbol | |
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| ID | 5614072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2837310 |
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| End bp | 2838524 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933251 |
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| Product | aminotransferase AlaT |
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| Protein accession | YP_001474077 |
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| Protein GI | 157375477 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.599264 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000284015 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGTCCAA TTATAAAATC AAATAAGCTA GATACCGTCT GTTATGACAT TCGAGGGCCT
GTGCATAAAG AGGCGCGCCA TCTCGAAGAC GAAGGCCATA GAATTTTAAA GCTTAATATC
GGTAATCCGG CTCCCTTTGG TTTTGAAGCA CCGGAGGAGA TTGTCCGTGA TGTCATCTTA
AATCTTCCCA GCGCGCAGGG GTATTGTGAG TCGAAAGGAC TTTTCTCTGC CCGTAAGGCC
ATAGTGCAGC ACTATCAATC GCAGGGGATC TTTGGTGTCG ATATTGAAGA TGTCTATATT
GGTAATGGCG TATCCGAGCT TATTGTGATG GCGATGCAGG GACTGTTAAA TACCGATGAC
GAGGTGCTCA TCCCCTCACC CGATTACCCC TTATGGACAG CTGCCGTTCA CCTGTCAGGC
GGCAAGGCAC AACATTACCG CTGTGATGAG GAATCTGATT GGTTTCCCGA TCTGGACGAT
ATCAAGAGTA AGATCACGCC TCGCACCCGG GCTTTAGTAC TCATCAACCC CAATAACCCA
ACGGGCGCGG TTTACTCCAG AGACCTACTG CTTGAAGCCG TCGAGATCTG TCGTCAGCAT
GATCTGATCC TGTTCGCAGA TGAGATTTAC GACAAGATAC TTTACGATGA AGCTCAGCAT
ATTCCTGCTG CCAGCCTCTC AGATGACATC TTAACCGTGA CATTCAATGG CCTGTCCAAA
TCATACCGTG CCGCTGGCTT TCGTGTCGGC TGGATGATGC TATCGGGTAA CTTAAAAGAT
GCTAAGAGTT ATATCGAAGG CTTAGATATG CTGGCTTCGA TGCGACTGTG TTCGAACGTG
CCGAATCAAC ACGCCATTCA GACCGCATTG GGAGGTTATC AGAGTATCAA TGAGCTGCTT
ATCGATGACG GCCGTTTGAA AGTACAGCGC GATACCTGCG TTGAATTACT CAACCAAATC
CCGGGCATAA GTGTCAAATG TCCCAAAGGG GCCATGTACG CTTTCCCTAA GCTCGATGCT
AAGAAATTTA ACATCCGTGA TGACGAACGT TTGGTTCTCG ATCTTCTGAA ACAGAAAAAA
ATTCTTCTGG TACAAGGCAC CGCCTTCAAC TGGCCAGAAC CTGACCATCT CAGAGTCGTG
TTTTTACCTC ATAAAGAGGA ACTTGAAAAA GCATTAATCG AGTTCGGTGA GTTTATGGAT
GGCTACAGGC AATAA
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| Protein sequence | MRPIIKSNKL DTVCYDIRGP VHKEARHLED EGHRILKLNI GNPAPFGFEA PEEIVRDVIL
NLPSAQGYCE SKGLFSARKA IVQHYQSQGI FGVDIEDVYI GNGVSELIVM AMQGLLNTDD
EVLIPSPDYP LWTAAVHLSG GKAQHYRCDE ESDWFPDLDD IKSKITPRTR ALVLINPNNP
TGAVYSRDLL LEAVEICRQH DLILFADEIY DKILYDEAQH IPAASLSDDI LTVTFNGLSK
SYRAAGFRVG WMMLSGNLKD AKSYIEGLDM LASMRLCSNV PNQHAIQTAL GGYQSINELL
IDDGRLKVQR DTCVELLNQI PGISVKCPKG AMYAFPKLDA KKFNIRDDER LVLDLLKQKK
ILLVQGTAFN WPEPDHLRVV FLPHKEELEK ALIEFGEFMD GYRQ
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