| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2338 |
|---|
| Symbol | |
|---|
| ID | 5613854 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2835236 |
|---|
| End bp | 2836414 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640933249 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001474075 |
|---|
| Protein GI | 157375475 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4394] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000322197 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000102479 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACTG AAATAGCTAA TCAACACTGG GATATCTTCT GCGAAGTCGT GGATAATTAC
GGCGACATAG GCGTAACATG GCGTTTAGCA AAGCAGCTCG TCAAAGAATA CCAGATTGAT
ATCAATCTCT GGGTCGATGA TTTAAAGAGT TTCTCGCATA TTTTACCGGG ACTAAAACCA
GATCAGGCAA CACAAACGTT TGACCATGTC ACCATACATC AATGGAATGT TCCGTTAGAC
ATTAACTTTG TACCGGGGGC CGTTCTGATT GAAGCCTTCG CCTGTGAGCT GCCTGAGCAA
GTTAAATCTC AGTTAATAGC ACTGCAACAA AGTCCCGATG ACACTCCCCC GCTTTGGCTA
AACCTGGAAT ACCTAAGTGC CGAAAATTGG GTAGAAGGGT GTCATGGTCT ACCCTCGATG
CAAGCAAGCG GTATAAAGAA GTACTTTTAC TTTCCTGGCT TTACCCCAAA AACAGGGGGA
CTCATTTGCG AAAACGAGTT GCTTGAGCAG CGTACTGCGT GGCAGTCGGA CCCCGCTAAT
AAGCTGGCAC TGTTTTCACA GTTAGGCCTG AGCGGCATTG ATGTGCAAGA TAAAGTGATC
AGTGTTTTCA GCTATGAAAC GCTGGCATTA TCGGCACTGT GTCAACAGTG GCAAGAGTCT
AGTCAAAAGA TACATGCTTT GATCCCCAAA GGTCGTAGCT TAAATAGTCT GACTCATTTG
CTCCCTTGCT CCGTTGAAGC GTTGACCCCG GGGCAACAGA TTGTTATCAA CAATTTGACC
CTTCACATTC TGCCAATGAC AGATCAACCG AGCTTCGATC GCCTACTCTG GAGTTGTGAC
TTTAATATCG TGCGAGGCGA AGATTCATTT TTGAGGGCTC AATGGGCGGC TAAACCCTTT
ATCTGGCACA TTTATCCTCA AGAAGATGAC TATCACCTGG TAAAATTAGA AGCTTTTATT
AGTCTTTACT GCGATAATCT TGCACCTGAA ATTGCCAAGT ATTGGACCGA ATTGAATCTT
GCATTCAACC AAGAACAGCA ATCTGCCGTG AATCTTCACT GGCAAAACCT TGATTCTGTT
AATTTGCCTT TGTTGCAACA CGCACAAAAA TGGCCAATTT TCGCATTAAA TGATGCAGAT
CTTGCTACTC GACTGGTTCA ATTCGTCAAA AATAGCTAA
|
|---|
| Protein sequence | MSTEIANQHW DIFCEVVDNY GDIGVTWRLA KQLVKEYQID INLWVDDLKS FSHILPGLKP
DQATQTFDHV TIHQWNVPLD INFVPGAVLI EAFACELPEQ VKSQLIALQQ SPDDTPPLWL
NLEYLSAENW VEGCHGLPSM QASGIKKYFY FPGFTPKTGG LICENELLEQ RTAWQSDPAN
KLALFSQLGL SGIDVQDKVI SVFSYETLAL SALCQQWQES SQKIHALIPK GRSLNSLTHL
LPCSVEALTP GQQIVINNLT LHILPMTDQP SFDRLLWSCD FNIVRGEDSF LRAQWAAKPF
IWHIYPQEDD YHLVKLEAFI SLYCDNLAPE IAKYWTELNL AFNQEQQSAV NLHWQNLDSV
NLPLLQHAQK WPIFALNDAD LATRLVQFVK NS
|
|---|
| |