| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2323 |
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| Symbol | |
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| ID | 5611226 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2817938 |
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| End bp | 2819515 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933234 |
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| Product | glycine betaine transporter |
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| Protein accession | YP_001474060 |
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| Protein GI | 157375460 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.100678 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00817837 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATACAA GAAAAGATAA ATACAGTATT GATAATACCG ATTACACCAT CGGACAAGAT
AACATTCAAA AATGGGGCTT TGATGTTCAC AATCCTGTTT TTGGGATCAG CGCAGCCTTA
ATTGGCCTAT TTTTATTAGC CATTTTGGTG GCCGACCCAG AAACATCAAA ATCTGTATTA
GACGGCATAA AATGGAAAAT CATTGGCGCT TTTGATGGTT TGTTTATGTG GTCTGCCAAT
ATTTTTGTGA TTTTTTGTGT AGCAATGATT GTCTCCCCAT ATGGCAAAAT TCGTTTAGGT
GGTGATGAGG CAAAAACCGA CTATTCGATG AAGTCATGGA TAGCAATGTT ATTTGCTGCT
GGTATGGGTA TTGGACTCAT GTTTTGGGGG GTTGCAGAGC CTGTTGCCTA CTTTACCGGT
TGGTACGAAA CGCCACTAAA TGTTGCTGCA AACACACCGG AAGCCGCTAA GCTGGCTCTT
GGCGCCACCA TGTTCCATTG GGGACTTCAC CCATGGGCGA TTTATGGCGT CGTGTCACTG
TCGTTAGCAT TTTTCGCTTA CAATAAGGGC TTACCGCTTT CCATGCGTTC TGTCTTTTAT
CCTATCCTGG GTGATCGCAC TTGGGGTTGG CCTGGGCATG TTGTTGACAT TCTAGCGGTG
CTTGCCACTC TGTTTGGTCT CGCGACTTCT CTGGGACTGG GTGCTCAACA AGCCGCGAGT
GGTTTTCATC ATGTGTTCGG AATTGAAAAT GGCTTAATGC TTCAAATCGC TATCATATTT
ATAGTGACCT TGTTAGCCGT TATCTCTGTC GTTCGTGGCA TTGAAGGTGG TGTAAAAATC
ATCAGTAATG TCAATATGCT GCTGGCACTT GCTTTAGTGG TGTTTGTGAC TTTGGTGACT
TTTGCAGTAT CCATGGGAAC CATTCCGACA ACAGTCATGG GATACATTGA AAATATTATT
CCATTAAGTA ACCCAATTGG CCGTGAAGAT GAAGCCTGGA TGCATGGCTG GACTGTTTTC
TATTGGGCGT GGTGGATCTC TTGGTCTCCT TTTGTCGGCA TGTTTATTGC GCGTATTTCA
CGTGGACGTA CAATTCGTGA GTTCATGACT GCTGTACTCA TTGTACCAAC GGTGGTTACT
ATGCTTTGGA TGTCAGTATT TGGTGGTGTT GCGATTGATC AAATCGTTAA TAAAGTCGGT
ACGTTAGGTG AAAAAGGCTT AACAGAAGTG CCACTTGCCA TGTTCCAAAT GTTTGACGCA
TTGCCAATGG GTAATATTTT GTCTCTACTC GCTGTTGTGT TAGTGCTGGT TTTCTTTGTG
ACCTCATCAG ACTCTGGGTC ACTGGTTATC GATAGCATCA CATCAGGTGG TAAAGTCGAT
GCGCCAGTTC CTCAACGCGT ATTCTGGGCA TTTATTGAAG GCGCAATTGC TGCCGGTCTG
GTTTGGGTGG GTGGTACCGA AGCCATTGAA GCCTTGCAAG CCGGTGCTAT TTCAACAGCC
TTGCCGTTCA CCATTATTTT GTTGGTGATG TGTGTCAGTT TGATAAAGGG ACTACGAACA
GAAAAACGTC CTGGTTAA
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| Protein sequence | MNTRKDKYSI DNTDYTIGQD NIQKWGFDVH NPVFGISAAL IGLFLLAILV ADPETSKSVL
DGIKWKIIGA FDGLFMWSAN IFVIFCVAMI VSPYGKIRLG GDEAKTDYSM KSWIAMLFAA
GMGIGLMFWG VAEPVAYFTG WYETPLNVAA NTPEAAKLAL GATMFHWGLH PWAIYGVVSL
SLAFFAYNKG LPLSMRSVFY PILGDRTWGW PGHVVDILAV LATLFGLATS LGLGAQQAAS
GFHHVFGIEN GLMLQIAIIF IVTLLAVISV VRGIEGGVKI ISNVNMLLAL ALVVFVTLVT
FAVSMGTIPT TVMGYIENII PLSNPIGRED EAWMHGWTVF YWAWWISWSP FVGMFIARIS
RGRTIREFMT AVLIVPTVVT MLWMSVFGGV AIDQIVNKVG TLGEKGLTEV PLAMFQMFDA
LPMGNILSLL AVVLVLVFFV TSSDSGSLVI DSITSGGKVD APVPQRVFWA FIEGAIAAGL
VWVGGTEAIE ALQAGAISTA LPFTIILLVM CVSLIKGLRT EKRPG
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