Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2317 |
Symbol | |
ID | 5610963 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2807920 |
End bp | 2809698 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640933227 |
Product | hypothetical protein |
Protein accession | YP_001474054 |
Protein GI | 157375454 |
COG category | [S] Function unknown |
COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000037575 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00132048 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAAAG CAACACTGTC ATTAGCGGTA GCATTGTCAT TAACAGCACT CGCTGGTTGT CAATCTCAAG AGGTAGCCGA ACAGGTATCG CCGGCTTCGA TAGCTTCAAG CCAACAGTTA AGCTTTGCCC AATTTTCAAC GCAGTTTATA GACGAGCTAT GGAAGCAAGC ACCGACATGG GCACTCTATA GTGGTTACCA TAAATATGAT GGCGTGCTTA AAGTGCCTAA CGATGCTAGC CGCGCCGAGG CAATAAAGTT TAACAAGCAA CAACTGTCCA TGTTACAGGC CTTCGACAGA GATTCATTGT CGGCTAATGA GCTTATCGAT TATCGTCTGA TTGAGAACTT GCTTAAACGT GATACCTGGG AGATCACTAA GTTTAAATCC TGGCAGTGGA ACCCTGCATC GTATAACGTT GCCGGCGGTT TTGCCCAGTT GATCAATGAA GATTTTGCCC CGCTCGATGA TAGGTTACGT TCAGTATTGG CTCGAATGGA GAATGTCCCA GCCTATTACA GTGCCGCTCG GGAGAATATT AATAACCCGA CACTCGAGCA CACTCAACTG GCTCAGATGC AGAATAAAGG TGCATTTTCT GTTTTTTCAG CAGAACTGCT CGCACAAGCC GAAAGCTCGG GACTGACAAG CGATGAAAAG GCATTGTTTA AAACGCGTTT CGATGCGGCG ACTCAGTCAA TCAATGAGCA TATCGCCTGG CTGGGTGAGC TAGTATCTAA ACTGGAAAAA GAGGGCGCAC GCAGCTTCAG GATTGGTGAA GCGCTTTATG AAGAGAAATT CTCTTTCGAT ATTCAAGCTG GAATGAGTGC AAAAGGATTG TATGAAAAAG CCCTGGCTGA CAAAAGTCGG GTTCAGGGTG AGATGGCAAA GATCACCGCT AAGCTATGGG ATACCTATTT CGACACTCCT AAACCTTTAG ATGATAATAA AGCTACGCGT CAGCTGATCG ATAAACTCTC CTCTAAGCAT GTAAAACGTG AGGCGTTTGT CGATGAAGTT CGTGCTCAGA TCCCAGCCTT GATAAAATTT GTCAATGACA AACAACTCGT TACCTTAGAC CCTAAAAAGC CGTTAGTTGT ACGTGAAACA CCGGAATATA TGCGCGGCTT CGCCGGCGCC TCTATCAGTG CTCCCGGGCC TTATGAGAAA TCCAGCAATA CCTATTACAA CGTTACGCCT CTCGATGCCA TGGATGATGA GTCTGCCGAA AGTTATCTTA GAGAGTATAA CCACTGGATC TTGCAGGTAC TGAATATTCA TGAGGCAATA CCTGGCCACT ACACTCAGCT GGTCTATTCA AATGAGTCAC CTAGCATGGT GAAAAGCCTG TTTGGTAACG GTGCTATGGT AGAGGGCTGG GCTGTTTATA CAGAGCGTAT GATGCTCGAA GAGGGTTATG GTGATTTTGA GCCCGAGATG TGGCTGATGT ACTACAAGTG GAACCTACGA GTCATTGCCA ACACGCTACT GGATTACAGC ATTCAGGTGA AGGGCATGAC AGAGGATGAA GCTATTAGCT TAATGACCGA AGAGGCATTT CAACAAACCG CAGAAGCCGA GGGTAAGTGG AGAAGGGCGA CATTGAGTCA GGTTCAGTTA ACCAGCTATT ACTCCGGCTA CCGTGAGATC TATGATTTTC GTGAAGAGTT AAAAGCGAAG CAGGGGGAGC AGTTTGACCT TAAAGCATTC CACGAGCAGT TCTTAAGCTA TGGAAGTGCG CCTGTTAAGT ATGTGCGTCA GTTGATGCTC AATCAATAA
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Protein sequence | MKKATLSLAV ALSLTALAGC QSQEVAEQVS PASIASSQQL SFAQFSTQFI DELWKQAPTW ALYSGYHKYD GVLKVPNDAS RAEAIKFNKQ QLSMLQAFDR DSLSANELID YRLIENLLKR DTWEITKFKS WQWNPASYNV AGGFAQLINE DFAPLDDRLR SVLARMENVP AYYSAARENI NNPTLEHTQL AQMQNKGAFS VFSAELLAQA ESSGLTSDEK ALFKTRFDAA TQSINEHIAW LGELVSKLEK EGARSFRIGE ALYEEKFSFD IQAGMSAKGL YEKALADKSR VQGEMAKITA KLWDTYFDTP KPLDDNKATR QLIDKLSSKH VKREAFVDEV RAQIPALIKF VNDKQLVTLD PKKPLVVRET PEYMRGFAGA SISAPGPYEK SSNTYYNVTP LDAMDDESAE SYLREYNHWI LQVLNIHEAI PGHYTQLVYS NESPSMVKSL FGNGAMVEGW AVYTERMMLE EGYGDFEPEM WLMYYKWNLR VIANTLLDYS IQVKGMTEDE AISLMTEEAF QQTAEAEGKW RRATLSQVQL TSYYSGYREI YDFREELKAK QGEQFDLKAF HEQFLSYGSA PVKYVRQLML NQ
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