| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2303 |
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| Symbol | |
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| ID | 5611115 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2788824 |
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| End bp | 2791538 |
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| Gene Length | 2715 bp |
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| Protein Length | 904 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933213 |
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| Product | DNA topoisomerase (ATP-hydrolyzing) |
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| Protein accession | YP_001474040 |
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| Protein GI | 157375440 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
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| TIGRFAM ID | [TIGR01063] DNA gyrase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0000155743 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTGATC TGGCTTCATC TATAACACCA ATTAATATTG AAGACGAATT AAAGAATTCA
TATCTTGATT ATGCCATGAG CGTAATCGTA GGCCGGGCAT TACCAGATGT CCGTGATGGC
CTTAAGCCTG TTCATCGCCG CGTTCTTTTC GCGATGAGTG AGCTTAAAAA TGATTGGAAC
AAACCCTATA AAAAGTCGGC ACGTGTTGTC GGTGACGTAA TCGGTAAATA TCACCCTCAT
GGTGACACCG CCGTTTATGA CACCATAGTA CGTCTGGCTC AGCCTTTCTC GATGCGTTAC
ACCTTGGTCG ATGGTCAAGG TAACTTCGGT TCTGTCGATG GCGATGCCGC GGCAGCGATG
CGTTATACCG AAATTCGTAT GGATAAGGTA GCTCATCAGT TATTGGCCGA TCTTGAGAAA
GAGACGGTCG ATTTTGTTCC TAACTATGAT GGTACTGAGT TTATTCCTTC AGTCTTGCCG
ACACGTATTC CGACGCTTCT GGTTAACGGT TCATCGGGTA TTGCGGTAGG TATGGCAACT
AACATTCCGC CACACAACAT CAATGAAGTG GTTAGTGGCT GTCTTGCCTT AATCGAAAAC
CCCGATCTGA CCATTAACGA ATTGATGGAA TACATTCCGG GCCCGGATTT TCCGACAGCC
GCAATCATCA ATGGCCGTAA AGGTATCATC GATGCCTATC ACACGGGTCG TGGCCGAGCT
GTCATGCGTG CGAAAGCCGA TGTCGAAACT GAAGACAATG GTCGCGAGCG TATTATTGTC
CACGAGATCC CTTATCAGGT TAACAAGGCG CGCTTGATCG AGAAGATAGC CGAGCTGGTT
AAAGATAAGA AGATCGAAGG CATCAGTGGG CTGCGTGACG AGTCAGATAA AGACGGTATG
CGTATCGTTG TCGAGATCAA ACGTGGTGAA GTGGGTGAAG TCGTTCTAAA CAACCTTTAT
GCACAAACCC AAATGCAGTG CTCGTTCGGT ATTAACATGG TTGCTCTGAC CAATGGTCAG
CCAAAACTAT TTAATCTCAA AGAGATGCTT GAATGCTTCA TCTTACACCG TCGTGAAGTT
GTTACACGTC GAACCGTATT TGAATTGCGT AAAGCCCGCG ATAGAGCTCA CATCCTTGAG
TCTCTTGCGA TTGCATTAGC TAACATCGAT CCAATCATCG CATTGATCAA GGCTTCTCCA
ACACCAGCCG AAGCAAAAGT GAAGCTTATT GCTGAAGGTT GGGAGTTAGG TCATGTGCAA
GGCATGCTTG AAAAAGCAGG TGATGATGCA GCTCGCCCTG AGTGGTTAGA GCCTGAGTAC
GGTATCCGTG ACGGTCGTTA CTACTTAACA GAGCAACAAG CACAAGCGAT CCTTGATCTG
CGTCTACATA AGTTGACCGG TCTTGAACAT GAGAAGATCT TAAAAGAGTA CGAAGAGTTA
CTGGAGATCA TTGCAGCGCT TCTTTATATT CTTCGCAGCC CGGAACGTCT GATGGAAGTT
ATCACTGAAG AGCTTCAAGA AGTTCTCGAA AACTTCGGTG ATGAGCGTCG CACTGTGATT
AATGCAAACG AAGTTGATAT GAGTCTTGAA GATCTGATCA ACGAAGAAGA TGTCGTAGTG
ACGCTATCTC ATCTTGGTTA TGCTAAGTAC CAGGCGCTTA CGGACTATCA AGCTCAACGC
CGTGGCGGTA AGGGTAAAGC TGCGACAAAA GTGAAAGATG AAGACTTCGT AGAGAAGTTA
CTCGTTGCCA ACACCCATGA TACGATCCTT TGTTTCTCTG ATTTCGGTAA GATGTATTGG
CTGAAAGTAT ACCAGTTGCC ACTTGCGAGC CGTACGGCCC GAGGTCGTCC AATTGTGAAC
ATACTGCCAC TGTCTGAAGG CGAACGTATT ACCGCTATCT TACCGGTACG TGAATATGCC
GATGATAAAT ACATCATCAT GGCCACTGCT CACGGTACTG TTAAGAAGAC TGCACTGACT
GCTTACAGCA ACCCACGTGC GAACGGTATC ATTGCGGTTA ACCTTAAAGA TGGCGATCAG
CTTATTGGTG TAGATATCAC CAATGGCGAA GATGAGATCA TGCTCTTCTC AGACGCGGGT
AAAGTGGTTC GTTTCAATGA GAAGGTACGT GATTCAGAAA CCGGTCAAGT TAAGCTCGAC
CCTGAAACAG GTGAAGAGGT CTTAGCCTTA CGCCCAATGG GTCGTACAGC GACTGGTGTT
CGCGGTATTC GTCTTGAAGA TGATCAAAAA GTGGTATCGC TAATCGTGCC TAAAGACGAT
GGTGCAATCT TGACTGTGAC TGAAAATGGT TATGGTAAGC GTACCGACCT TTCTGAGTAC
CCAGCTAAGA GCCGTGCTAC TAAAGGTGTG GTTTCAATTA AGATCAGTGA ACGTAACGGA
GCCGTTGTCG GTGCCGTTCA AGTAGGTGAA AACGATGAAA TCATGCTGAT CAGTGACAAG
GGCACCTTAG TACGTACTCC TGCGACGGGT GTATCGAGCA TTGGTCGTAA CACGCAAGGT
GTAACGATTA TTCGTACTGC AGAAGAAGAG AAGGTTGTTG GTCTGCAGAG AATCGATGAA
ATCCAGGATG ATGAGGTCGA ACTCGACGAA GAGGGCAACC CGATTGTTCC TGCAACCGAT
GAGGCAGTAG AAACAACATC TGAAGTAGAT ACACCTAAAG CTGACGATGC ACCAGAAGCT
GAGCCAGCAG AGTAG
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| Protein sequence | MTDLASSITP INIEDELKNS YLDYAMSVIV GRALPDVRDG LKPVHRRVLF AMSELKNDWN
KPYKKSARVV GDVIGKYHPH GDTAVYDTIV RLAQPFSMRY TLVDGQGNFG SVDGDAAAAM
RYTEIRMDKV AHQLLADLEK ETVDFVPNYD GTEFIPSVLP TRIPTLLVNG SSGIAVGMAT
NIPPHNINEV VSGCLALIEN PDLTINELME YIPGPDFPTA AIINGRKGII DAYHTGRGRA
VMRAKADVET EDNGRERIIV HEIPYQVNKA RLIEKIAELV KDKKIEGISG LRDESDKDGM
RIVVEIKRGE VGEVVLNNLY AQTQMQCSFG INMVALTNGQ PKLFNLKEML ECFILHRREV
VTRRTVFELR KARDRAHILE SLAIALANID PIIALIKASP TPAEAKVKLI AEGWELGHVQ
GMLEKAGDDA ARPEWLEPEY GIRDGRYYLT EQQAQAILDL RLHKLTGLEH EKILKEYEEL
LEIIAALLYI LRSPERLMEV ITEELQEVLE NFGDERRTVI NANEVDMSLE DLINEEDVVV
TLSHLGYAKY QALTDYQAQR RGGKGKAATK VKDEDFVEKL LVANTHDTIL CFSDFGKMYW
LKVYQLPLAS RTARGRPIVN ILPLSEGERI TAILPVREYA DDKYIIMATA HGTVKKTALT
AYSNPRANGI IAVNLKDGDQ LIGVDITNGE DEIMLFSDAG KVVRFNEKVR DSETGQVKLD
PETGEEVLAL RPMGRTATGV RGIRLEDDQK VVSLIVPKDD GAILTVTENG YGKRTDLSEY
PAKSRATKGV VSIKISERNG AVVGAVQVGE NDEIMLISDK GTLVRTPATG VSSIGRNTQG
VTIIRTAEEE KVVGLQRIDE IQDDEVELDE EGNPIVPATD EAVETTSEVD TPKADDAPEA
EPAE
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