| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2294 |
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| Symbol | |
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| ID | 5611043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2779074 |
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| End bp | 2779778 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933204 |
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| Product | orotidine 5'-phosphate decarboxylase |
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| Protein accession | YP_001474031 |
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| Protein GI | 157375431 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
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| TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000688308 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000000829203 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGAATAATA AACCTATCGT GGTCGCCCTG GATTTTGATG ACAAAAATGC TGCTTTGCAA
TTGATCGATC GCTTAGACCC TCAAATGTGT CGTTTAAAAG TGGGCAAAGA GATGTTTACC
CTCTTTGGTC CAGAGCTTGT TAAAGATATT CATAGCCGTG ATTTCGACCT GTTTTTAGAC
CTTAAATTCC ATGATATTCC AAATACAGTG GCTAAGGCTG TTACAGCTGC GGCTGAGTTA
GGTGTTTGGA TGACCAACAT TCATGCCACC GGTGGTTTAG CCATGATGGA AGCGGCGAAG
AAGGCTCTGG TCCCTTACGG TAAAGATGCG CCTTTGTTGA TAGCGGTAAC GGTATTAACT
TCTATGAGCG ATGAAGATCT TAAGCTTATC GGCATCGATG TACCAGCTTT CGAACATGTT
CAACGCCTGG CAAGACTCAC ACAACAGGCA GGTCTCGATG GTGTTGTTTG TTCGGCTCAC
GAAGCGCAGC TATTGAAATC AAGCTTAGGT GAAAGTTTTA AATTGGTGAC GCCGGGTATC
CGTCCTGCTG GAGCAGACAA GGGCGATCAA CATAGGGTCA TGACGCCACC ACAGGCTATT
GAGGCGGGAT CGGATTATCT TGTCATCGGT CGACCTATTA CTAAGGCCGC AGACCCATTG
GCTGCGCTGA CCGCGATCCA TCAGTCGCTG AGCATTCCTG GTTAA
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| Protein sequence | MNNKPIVVAL DFDDKNAALQ LIDRLDPQMC RLKVGKEMFT LFGPELVKDI HSRDFDLFLD
LKFHDIPNTV AKAVTAAAEL GVWMTNIHAT GGLAMMEAAK KALVPYGKDA PLLIAVTVLT
SMSDEDLKLI GIDVPAFEHV QRLARLTQQA GLDGVVCSAH EAQLLKSSLG ESFKLVTPGI
RPAGADKGDQ HRVMTPPQAI EAGSDYLVIG RPITKAADPL AALTAIHQSL SIPG
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