| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2284 |
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| Symbol | |
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| ID | 5611513 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2764422 |
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| End bp | 2767589 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640933194 |
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| Product | acriflavin resistance protein |
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| Protein accession | YP_001474021 |
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| Protein GI | 157375421 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.00646069 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCTCAGT ATTTTGTTAA TCGCCCTGTT TTTGCCAGCG TGATATCCAT CGTCATCGTG
CTCCTTGGCG TTATTGCCAT GTTCCAGCTG CCGATAGATC AATATCCCTA TATTACGCCG
CCACAGGTGA AGGTCTCGGC CTCCTATCCC GGGGCAACCT CAACTACCGC CGCCGAATCT
GTTGCAACGC CGCTCGAGCA AGAGTTAAAC GGTGTGCCCA ACATGATCTA CATGAGCTCG
AAAAGTACCA ACTCGGGCAG CGCTAACGTG ACTATCACCT TCGATGTGGG CACCAATCCC
GATCTGGCTG CTGTCGATGT GCAAAACTCG ACCCAGCAGG CGACGGGAAG CTTGCCCATC
GATGTACAAA CAGAAGGGGT GTCAGTCTCC AAAGAGGCCT CGGTAGAGCT GCTTAAATTA
GCACTGACCT CCAGTGACGA GCGTTATGAT GAGATCTATC TCAGTAACTA CGCCACCATT
AATATTCAGT CGGCTCTGAA ACGCATTCCC GGTGTGGGGC GGGTACGTAA CACCGGCTCT
CGTAGTTACT CGATGCGAGT CTGGCTTAAG CCTGACATGA TGGCAGGCTA CGGCTTGACG
ACCAGTGATG TTATCGGTGC CATCAAGGCG CAAAACAGGG AGTCGCCGGC TGGCTCTATT
GGCTCTCAGC CAAATACCGA CTCGCTCAGC ATGACATTGC CCATTACCGC CGCCGGGCGT
ATGAGCAGTG TGCCACAATT TAATGAGATC ATCGTTCGGG CGAACACAGA TGGTTCACTG
ATCCGCTTGC GTGACATCGC CAGTATAGAA CTGGGCTCCT CAGCCTATAC ACTGCAGTCT
CAATTAAACG GCGCTAACGC GACTATCTTG CAGGTCTACC TATTACCGGG GGCCAATGCC
TTAGAGGTGA CTAAAAGGGT CAAGCAAGAG ATGGCCGCAT TAGGAGAAAA ATTCCCACAG
GGGATGGAGT GGCAGGTCTT CTTCGATGCA TCGATATTTA TCCAGAACTC GATAGATGAA
GTGGTAAAGA CGCTCATCGA AGCCCTGGTA TTAGTTATTC TGGTCGTCTA TCTGTTCCTT
CAGAACTGGC GCGCCACGCT TATACCGGCG ATTGCCGTAC CCGTCTCCCT GATTGGTACG
TTAGCCGCTA TGCTCGCCTT TGGGTTCACC ATCAATACCG TCAGCTTGCT GGCTCTGGTA
TTGGCTATCG GTATTGTGGT CGATGACGCC ATCGTTGTGG TGGAAAATGT CGAGCGCCTG
ATGCATGAAA ATGGCCTTAG TCCAACAGAG GCGACCAAGG TGGCGATGAA GGAGTTATCG
GGTGCATTAG TGGCAACCAG CTTGGTACTG GCCGCCGTTT TCGTCCCCGT CTCTTTCCTG
TCAGGTATTA CCGGTATCAT GTACCGAGAG TTCGCGGTCG CGATCACCGT TGCCGTACTT
ATCTCAACCG TGGTGGCGTT GACGCTGTCG CCGGCGCTGT GCGCCTTACT GTTAAGGCCG
GGCGATCAGG CAACCTCCGG TTTTTTCAAA TGGCTTAACG ACAAACTCGA TATGAGTACG
AGTAAGTATG TGGCGTTAGT TACATTAACG AATAAGCATG CTAAACGCAG CTATCTGGCC
TTTGCCGTAA TGGTGGGCGG TGTGTATGTC ATCATGTCTG GCCTGCCATC GAGCTTTATG
CCCGATGAAG ATCAGGGACG CTTCTTTATC GACATGTCGC TACCTAATGG CGCCACCGTT
AACCGCTCAC AGGCGGTACT CAAAAAAGCC GAAGCCAAGG TACTTAATCA CCCAGCCGTG
GCCTACTCAT TTACCTTGGC GGGGGAGAAC CGTCGTTCTG GCTCTAACCA GGCCAATGGT
ATGTTTGAGA TCATATTGAA GCCCTGGTCG CAGCGCGCCG ATGACAATGC CACCGTGCAG
CAGGTGATGA AGGATATTAA GGTCTCCCTA CAAGATATCT TAGAGGCCGA ATTTAGTGTC
TATCTGCCAT CGGCCGTGCC GGGTTTAGGT AATGGCTCGG GCGTCGAGAT GGAGCTGCAA
GATACATCCG GCACTAACTT TAAAGGCTTA ATGGAGACGG CGGATGAACT GGTAGAGGCA
CTTAAACTAC AACCTGAGAT AGCCACTGCC GGTTTATCGC TGCAGAGCGC CATACCTCAG
CTGCACCTCA GTGTTGATGA AGCTAAGGCC ATGGCTATAG GTGTTAATAT CTCTGATATC
TACAGCACGA TTAAAACCTT TACCGATTCA TCTACCGTCA ACGACTTTAA CCTGTTTGGC
CGGGTGTATA GGGTTAAGGT CCAAGCCGAA GACAAATACC GTCAGTTCCC TGAGCAGATT
AAAGATTACT ACGTTCGTTC ATCCAGTGGA GCCATGGTGC CTATCGGTGT GTTAGCCGAA
TATGATTACT CTGTGGGTCC GGCTGCCGTA ACTCACTATA ACTTGTTTAC CAGCGCTTCA
ATCAATGCAT CTCCGGCTCA AGGCTATGCG TCGGGTGATG TGATCCGCGC AATAAACCGG
GTTGCCACGC CTATGCTGCC AAATGAGTTC AGGTATGAGT GGACCGGGAT CACTTACCAA
GAGGTGCAAT CGGCAAACCA GACCGGGATA GCGGTAACGC TCGCCATGGT GTTTGTGTTC
CTCTTCTTGT GCGCCCTATA TGAGAGTTGG ACGATTCCTA TCGCCGTGTT ACTTATCGCG
CCTATCGCCA TGTTGGGAGC GGCGTTAGGC ACATTCGTCA GTGGCATGGA GAGTAACCTA
TTTTTCCAGG TGGCATTTAT CTCGCTTATC GGCATGGCTG CAAAGAACTC GATTTTGATC
GTCGAATTTG CCAATCAGCT GCATAAACAG GGCAAGAGTC GCTTAGAGGC GGCTTTGGAA
GCCGCCAATA TGCGTTTCCG TCCTATCTTG ATGACCTCGA TGGCCTTCAT CTTAGGGGTA
TTGCCCTTGG TGTTATCGGT TGGGCCTGGC GCTGTGAGTC GACAGTCGAT CTCGATTCCT
ATCCTGTGTG GCATGATCTT CGCGACCACG ATAGGCATAG TGTTGGTTCC GCTCTTCTTT
GTTACTACTG CGGGATGGTT CAAGTCTAAA ACTGAGTCAA AGTCAGAAAT GCAGAGCGCC
GAAAATGAGT CCATTACCCC AACGGGTGAA CAGGGAGGGG CAGTTTAA
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| Protein sequence | MAQYFVNRPV FASVISIVIV LLGVIAMFQL PIDQYPYITP PQVKVSASYP GATSTTAAES
VATPLEQELN GVPNMIYMSS KSTNSGSANV TITFDVGTNP DLAAVDVQNS TQQATGSLPI
DVQTEGVSVS KEASVELLKL ALTSSDERYD EIYLSNYATI NIQSALKRIP GVGRVRNTGS
RSYSMRVWLK PDMMAGYGLT TSDVIGAIKA QNRESPAGSI GSQPNTDSLS MTLPITAAGR
MSSVPQFNEI IVRANTDGSL IRLRDIASIE LGSSAYTLQS QLNGANATIL QVYLLPGANA
LEVTKRVKQE MAALGEKFPQ GMEWQVFFDA SIFIQNSIDE VVKTLIEALV LVILVVYLFL
QNWRATLIPA IAVPVSLIGT LAAMLAFGFT INTVSLLALV LAIGIVVDDA IVVVENVERL
MHENGLSPTE ATKVAMKELS GALVATSLVL AAVFVPVSFL SGITGIMYRE FAVAITVAVL
ISTVVALTLS PALCALLLRP GDQATSGFFK WLNDKLDMST SKYVALVTLT NKHAKRSYLA
FAVMVGGVYV IMSGLPSSFM PDEDQGRFFI DMSLPNGATV NRSQAVLKKA EAKVLNHPAV
AYSFTLAGEN RRSGSNQANG MFEIILKPWS QRADDNATVQ QVMKDIKVSL QDILEAEFSV
YLPSAVPGLG NGSGVEMELQ DTSGTNFKGL METADELVEA LKLQPEIATA GLSLQSAIPQ
LHLSVDEAKA MAIGVNISDI YSTIKTFTDS STVNDFNLFG RVYRVKVQAE DKYRQFPEQI
KDYYVRSSSG AMVPIGVLAE YDYSVGPAAV THYNLFTSAS INASPAQGYA SGDVIRAINR
VATPMLPNEF RYEWTGITYQ EVQSANQTGI AVTLAMVFVF LFLCALYESW TIPIAVLLIA
PIAMLGAALG TFVSGMESNL FFQVAFISLI GMAAKNSILI VEFANQLHKQ GKSRLEAALE
AANMRFRPIL MTSMAFILGV LPLVLSVGPG AVSRQSISIP ILCGMIFATT IGIVLVPLFF
VTTAGWFKSK TESKSEMQSA ENESITPTGE QGGAV
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