| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2283 |
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| Symbol | |
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| ID | 5611512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2762917 |
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| End bp | 2764422 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933193 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_001474020 |
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| Protein GI | 157375420 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0628456 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGATAAGT TTATTTATAA ATGGCCGATG TTCAAACGTT CGTTGTCAAA GCCTGGTCAA
AACCGAATTG CATGTATCGC CCTGATGGGC TGCACAACGC TCTTAGCGGG TTGTGCCATG
GGGCCTGATT ATCAACAGCC TGAGCTGGAC CTTCCGGGCC AGTACCATAA TGAATTACAG
CAAGGAGAGG GCGATAATAT AGGTAAAACC CAGTGGCGTG ATTTTTATCT GGACCCCCAA
CTACAACCTT TGATAAACCA TGCTTTGGCG CAGAACCTGG ATCTGGAAGC CATGCGCTCA
CGTCTTATCG CCGCGAGGCA GCGCATTACC GTCACCGACG CCGCTCTGTA TCCTAAAGTT
GGGATCGATG CCTATGGCGA ACGTTCACTC GATAGCGGAC TCACCAATAC GGAACCCTCA
AGTGAAGATG AGTTCAATTT GTCAGGCGTC GTATCCTGGG AGCTGGATAT CTGGGGCGCA
AATCGCCGAC GCAGTGAAGC TGAATATGCG AACTTCCTCT CAGCTCAGGA GTCATTGAAC
TTAGCGACAA TCAGTTTGAT CAGTGATGTC GCCAGTCGTT ATTACGAATG GTTGGACATA
GAGCAGAGAT ATCAAATTTC GACCAATACC GTGGCCCTGC GTAAAAAAGA GCTGGATTTG
GCTCGTCTTC GCAAAGAAAA TGGCGTCATC TCCGGCTTAG AGGTCAGGCA AGCAGAAGTT
GAATTCCAGA GTGCCAAAGT CACCTTACCC GATCTCGATT TCGAAAGAGG GGAGAAGGCT
AACCAATTGA GGATATTGCT GGGAGAGTTC GGTTATCCAC TCCAGCTACA GACCGAAGCG
GAGCTTAGAG TGGAAGACGC ACTCTTCCCC GCACAATTTA ATGTCGGTGT CCCCTCTGAG
ATGTTATCTC AGCGTCCCGA CGTCAAGGCG GCAGAACAGG CTTTGATTGC GATGAATGCA
AAAGTGGGAG TCGCCAAGAC GGCATTCTTT CCGAAGTTTA CCATCAGCGG CAGTTTTGGT
CGTGAATCCG ATGAACTGAG TAACTTGCTC GATAGTGAGG GTGTTACCTG GTCGTTACTC
GGAGGCATTA CGGCGCCAAT CTTTAATGCC GGGAGTATCT CTGCTCAGTA TGAGATTGCC
AAAGAGGAGT CCAAACAGGC CCTGCTTGCT TATAGAAATA CGGTGCTGAG GGCTTACTTT
GAAGTCAATG ATGCCATGAA TAGCTTCAGA CGTTCTGAGC TTGCCATCAA TGCCCAGCAG
GAACTGGTGG CTGCCTCGAG TGAGTATAAC CGTTTAGCCG GACTGAGATA CCGCAATGGT
GTCGCCAGCT CATTGGATCT GATGGATGCT CAACGTAAAC TGTTTAGCGC CCAACTCGCC
TTGAGTCAGA TAAAACGGGA CAGACTCCTT TCCATGATAA CGCTTTACCG CGCTCTGGGT
GGTGGGATTC TTTCGCTACA AGATGCGCCG CCTGTGATGG CTGCCGATAT TATCGAGGGG
GAATAG
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| Protein sequence | MDKFIYKWPM FKRSLSKPGQ NRIACIALMG CTTLLAGCAM GPDYQQPELD LPGQYHNELQ
QGEGDNIGKT QWRDFYLDPQ LQPLINHALA QNLDLEAMRS RLIAARQRIT VTDAALYPKV
GIDAYGERSL DSGLTNTEPS SEDEFNLSGV VSWELDIWGA NRRRSEAEYA NFLSAQESLN
LATISLISDV ASRYYEWLDI EQRYQISTNT VALRKKELDL ARLRKENGVI SGLEVRQAEV
EFQSAKVTLP DLDFERGEKA NQLRILLGEF GYPLQLQTEA ELRVEDALFP AQFNVGVPSE
MLSQRPDVKA AEQALIAMNA KVGVAKTAFF PKFTISGSFG RESDELSNLL DSEGVTWSLL
GGITAPIFNA GSISAQYEIA KEESKQALLA YRNTVLRAYF EVNDAMNSFR RSELAINAQQ
ELVAASSEYN RLAGLRYRNG VASSLDLMDA QRKLFSAQLA LSQIKRDRLL SMITLYRALG
GGILSLQDAP PVMAADIIEG E
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