| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2254 |
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| Symbol | |
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| ID | 5611894 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2718274 |
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| End bp | 2719542 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640933164 |
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| Product | sensory box protein |
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| Protein accession | YP_001473991 |
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| Protein GI | 157375391 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTGAAAA CACCACAAAA ATTACAACAA ATGGTCGATG CCATCCATGC AAGTATTGCC
GTGGTTGAAC GACATGAGCA TGAATTTATC ATTCTTGCCT GTAATGAACG CTTTAAAAAT
ATGCTTGGAG AAAATCCTAA CCTCACTCCT TATTGTTCGC TTAACAGCAT TCTGGCTACC
TCGATGGCCA ATACTCTGTT GAGGTTTCTT CCCGAGGTAT TTGATACCGA TGAACCAATA
GAGTTAGAGC AGGCATTCGA GAAAGGTCAA AAGTCGAAGT GGTGGCGTCT GTTCTTGAAA
CCTATGGCAC AACCCCATGG TCATCAAAAG CGAGTGATGA TAACGGGGAT AAATATGGAT
GATAAAGTCG CCCTCGAAAC TGAAATTAAT AAGACTGGAG CCAGATACAG CTCTGTGGTT
AAGGGAGCCT TCGATGCCAT CATCACCATG GACAGATACC AGACAATTAA CTATTTTAAT
CGGGCGGCAG AGCTAATCTT TGAATATAGC GCAGAAGAGA TTATTGGCAA ACCAATCACT
AGCCTGATGC CTGTTCGCCA CAGAGAGCAC CATTCGGAAT ATGTAGAAGA GTTTAACAAT
GAAATAGTCT CTTCTCGTGA TATGGGAGAG AGGATACAGA TATATGGCCT AAAAAAAAGT
GGCGTAGAGT TTGCTGCAGA AATAAGCATC TCTAAGATAC TTGTCGAGGG AGAGACGGAA
TTTACCGCGA TCATCAGAGA TGTTTCGCAG CGAACACAGC TACTCGATGA ACTGAAATTC
AAGCTTAATA CCGACTATCT GACAGGGCTT AGAAACCGTA ACTATCTCGA TCATAAACTA
ATCAGCATGT CGAACCGCTT TAAGCGTTAT GGATTTAGGT TTTCCCTGTT GATGATCGAC
TTAGACCATT TCAAACAGAT CAATGATACC TATGGCCATA TGGTTGGCGA TCAGATCCTG
AAATGCTTTG CCGATGCAGC CACCGCACTG CTACGCGAGG GAGATAAAAT TGCACGATTC
GGCGGAGAGG AATTTGCAGT CATTCTACCC GGAACCGAGC TATATGCGGC TAAACTGACT
GCCACACGGT TATGCAAACA CATTAGTGAA CAAGCGTTTA TCGGGCCAGA TGAGAAAGTC
ATTCCATTTA CTGTCAGTAT CGGTGTCGTA GAATTTGAAC CTGAAGACGA TGTAAAAAGT
ATAATGAACC GTGCCGATGA AGCCCTATAC AAGGCCAAAG TCGGCGGCAG GAATCGTATA
TCCGATTGA
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| Protein sequence | MLKTPQKLQQ MVDAIHASIA VVERHEHEFI ILACNERFKN MLGENPNLTP YCSLNSILAT
SMANTLLRFL PEVFDTDEPI ELEQAFEKGQ KSKWWRLFLK PMAQPHGHQK RVMITGINMD
DKVALETEIN KTGARYSSVV KGAFDAIITM DRYQTINYFN RAAELIFEYS AEEIIGKPIT
SLMPVRHREH HSEYVEEFNN EIVSSRDMGE RIQIYGLKKS GVEFAAEISI SKILVEGETE
FTAIIRDVSQ RTQLLDELKF KLNTDYLTGL RNRNYLDHKL ISMSNRFKRY GFRFSLLMID
LDHFKQINDT YGHMVGDQIL KCFADAATAL LREGDKIARF GGEEFAVILP GTELYAAKLT
ATRLCKHISE QAFIGPDEKV IPFTVSIGVV EFEPEDDVKS IMNRADEALY KAKVGGRNRI
SD
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