| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2250 |
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| Symbol | |
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| ID | 5611955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2714213 |
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| End bp | 2714929 |
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| Gene Length | 717 bp |
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| Protein Length | 238 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640933160 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001473987 |
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| Protein GI | 157375387 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.211123 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCAGCCCC AAGCCGACCC ATTTATCGTT CCTGTATGTC ATGATGAGAT TGAGATCTTG
TATCAGGATG AAGCATTGAT TTTAATCAAC AAACCCAGTG GCTTATTGAG CTTATCGGGA
AAGCATCCGG ATAATAAGGA TTCGGTACAC TTTCGTCTTG TTCAGGACTT TCCGAGCTGT
ACCATGATCC ATAGATTGGA CTTTGGTACG TCCGGCATCA TGTTAGTTGC GATGAATAAG
CAGGTAAACG CTCAACTCTG CAAGCAGTTT AGTGAAAGAA CCGTGTCGAA GCGCTATACG
GCACTATTAC ATGGACATCT GAAGATGGAT GAGGGCCTGA TTGATTTTGC TATCGCAAAA
GATACAGAGA ACTTTCCTCT GATGAAAGTC TGCCAGCAAA CTGGTAAGCC GGCGGTCTCA
AAGTTTAAGG TACTCGAACG TTTCGTTCAG ACTCATAACA ACGCTTTTTT CCAGGAGCAT
AAAAAAGCCG GAGATAGGGC GGTTACCCGG GTCGAATTTG AGCCTGTAAG TGGTCGGACT
CATCAGTTAA GGCTTCATAG TCAACAGATA AAACACCCCA TTTTGGGCTG TGATCTCTAT
GCCACCGATG AGGCGTTCTT TACCTCTTCG AGGCTATTGT TACATGCCAG CGAACTTAGC
TTTGACCACC CAATAACGGG AGAGCGGATG AATATTATCT CTCCGAGTCC GTTTTAG
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| Protein sequence | MQPQADPFIV PVCHDEIEIL YQDEALILIN KPSGLLSLSG KHPDNKDSVH FRLVQDFPSC
TMIHRLDFGT SGIMLVAMNK QVNAQLCKQF SERTVSKRYT ALLHGHLKMD EGLIDFAIAK
DTENFPLMKV CQQTGKPAVS KFKVLERFVQ THNNAFFQEH KKAGDRAVTR VEFEPVSGRT
HQLRLHSQQI KHPILGCDLY ATDEAFFTSS RLLLHASELS FDHPITGERM NIISPSPF
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