Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2245 |
Symbol | |
ID | 5612090 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2706535 |
End bp | 2708325 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640933155 |
Product | amidohydrolase 3 |
Protein accession | YP_001473982 |
Protein GI | 157375382 |
COG category | [R] General function prediction only |
COG ID | [COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.320188 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGAA TAGCTTCAAT TTTAATTAAT ATCGGCGTTA TTGCCTTTTT GTCAGCGTGC GCCGATAAAA ACAGTGGCTC TGATGAACAG ATTAATAGTC AAATAACCAA AGTTTATGTC AATGGTCGTG TATATACACA AGATAATGCA GCCCCCTGGG CCGAAGGTTT TGTGGTTATC GATGATAAAT TTGTTGCCGT TGGTGACGCT GAATCACTTA AATCCTGGAT GACACCCGAG TCTGAGACTA TCGATCTGGC GGGACAATTT GTTATGCCCG GGTTTGTCGA AGAGCATATC CATCCGGACA TGGCGACCGA GAGTTATCTT GGTATCAATA TCGTGCCATC TATGGGCTGG GAGAAAGTCA GCCATATTAT AGAAACGTTT GGTGAACAAA AATCAGATGA TAAATGGATC ATAGGTGGTG CATTAAATTG GTTAGCCGAT AATGGCGAGA AAATGCATCA GATTGATGCA TTATCACATT TCACTACACT CGATAAATTG ATTAACGATA AACCTCTGCT CTTGTGGGAC GTCGGCGGTC ATGCCGTATT AATCAATTCA CTGGGTTTAA AAAAGTTGGG GATCGATGAA AATTCAACGG CGCCGGAAGG GGGCATAATA GTCAAGGACA AAGACGGGCA ACCTACTGGT GTGCTGAGAG AAACTGCCGC AAACATGGCG TACGAAATAG CACTTAAAGA TCTTCCAAAG GGTAGAGAAT TGATCAACAG TGGGATAAAA CCTATCTTTT CTCAACTCAA CCAGTTCGGA ATTACCAGCA TCACTGATGC TTGGGCACGT GCCTATATGT TAGATGCTTA TAAAACATTG GCGGATAGCG GTGAACTTAC GCTCAGGATT AAGGCATATA TTGCAGATCC AATAGAGTGG CTGAGCCCGG AATGGAAAGA GGCCGCAAGC AATGCGATAG CAAATCACCA AGCCTATAAA GTTGACCACT GGCTGAATGC CGATGGAGTC AAGTTTGTTC TCGATGGTTC AGCCGGCGGT CAAACCATAA TTATGGTTGA GCCTTATGAA GGAACCAGCG ATCAGCATGG CGGCCCATGG CGAAATGATC CCGACTACTT TGCTGAGAAA TTCAGCGAAT ATGACAAGAA AGGGCATGTG ATGAAAGTGC ATGCCGTCGG TTCGCAATCT ATTCGAACGG CGCTCGATGC GATTGAAAAG TCACGGGAGA ATGGTTCAAC ACTTAGACAT AATATTGCCC ATACGGTATT TGTTCACCCG GATGACATTA AGCGCTTTAA AGAACATAAT GTCGGCGTCG AGTTTTCACC CCATTTTTGG TATCCGGTTT CTGGCTGGGA CATTATTCGT GATGAGTTAG GGCAACGAAG ATTGGATTGG GCATTTCCCT TTAAAACACT AAAAAATGAG GGGGTTGCTA TATCGGTTGG ATCGGATTGG CCGGTCGCAG AATCTCCCAA TCCATTCTTA GAACTTGAGA CTATGGTTAC CAGGCAAGTA CCAGGCGGAG GCGGGGAAAT TTTATCCGAT CCTAAAGAAC GTATATCCCT CAGCGATGCC ATAGAAGTGT TTACTATCGG TGGGGCCTTC GCTCAAAACC GTGAGGACAT CATTGGGTCG ATTGAAACCG GAAAACTCGC TGATTTTATT ATTTTGAATC AGAACCTATT CGAAATTGAG ATAAATCAAG TGCATAAGAC TCGCGTGATA CAAACCGTGG TCGGTGGCAA GACCGTTTAT GAAACTAAAA CTGAAACTGA GAAAGGGACC ACGAATGGAT CTACATTGTA A
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Protein sequence | MKRIASILIN IGVIAFLSAC ADKNSGSDEQ INSQITKVYV NGRVYTQDNA APWAEGFVVI DDKFVAVGDA ESLKSWMTPE SETIDLAGQF VMPGFVEEHI HPDMATESYL GINIVPSMGW EKVSHIIETF GEQKSDDKWI IGGALNWLAD NGEKMHQIDA LSHFTTLDKL INDKPLLLWD VGGHAVLINS LGLKKLGIDE NSTAPEGGII VKDKDGQPTG VLRETAANMA YEIALKDLPK GRELINSGIK PIFSQLNQFG ITSITDAWAR AYMLDAYKTL ADSGELTLRI KAYIADPIEW LSPEWKEAAS NAIANHQAYK VDHWLNADGV KFVLDGSAGG QTIIMVEPYE GTSDQHGGPW RNDPDYFAEK FSEYDKKGHV MKVHAVGSQS IRTALDAIEK SRENGSTLRH NIAHTVFVHP DDIKRFKEHN VGVEFSPHFW YPVSGWDIIR DELGQRRLDW AFPFKTLKNE GVAISVGSDW PVAESPNPFL ELETMVTRQV PGGGGEILSD PKERISLSDA IEVFTIGGAF AQNREDIIGS IETGKLADFI ILNQNLFEIE INQVHKTRVI QTVVGGKTVY ETKTETEKGT TNGSTL
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