Gene Ssed_2245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2245 
Symbol 
ID5612090 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2706535 
End bp2708325 
Gene Length1791 bp 
Protein Length596 aa 
Translation table11 
GC content44% 
IMG OID640933155 
Productamidohydrolase 3 
Protein accessionYP_001473982 
Protein GI157375382 
COG category[R] General function prediction only 
COG ID[COG1574] Predicted metal-dependent hydrolase with the TIM-barrel fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.320188 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGAA TAGCTTCAAT TTTAATTAAT ATCGGCGTTA TTGCCTTTTT GTCAGCGTGC 
GCCGATAAAA ACAGTGGCTC TGATGAACAG ATTAATAGTC AAATAACCAA AGTTTATGTC
AATGGTCGTG TATATACACA AGATAATGCA GCCCCCTGGG CCGAAGGTTT TGTGGTTATC
GATGATAAAT TTGTTGCCGT TGGTGACGCT GAATCACTTA AATCCTGGAT GACACCCGAG
TCTGAGACTA TCGATCTGGC GGGACAATTT GTTATGCCCG GGTTTGTCGA AGAGCATATC
CATCCGGACA TGGCGACCGA GAGTTATCTT GGTATCAATA TCGTGCCATC TATGGGCTGG
GAGAAAGTCA GCCATATTAT AGAAACGTTT GGTGAACAAA AATCAGATGA TAAATGGATC
ATAGGTGGTG CATTAAATTG GTTAGCCGAT AATGGCGAGA AAATGCATCA GATTGATGCA
TTATCACATT TCACTACACT CGATAAATTG ATTAACGATA AACCTCTGCT CTTGTGGGAC
GTCGGCGGTC ATGCCGTATT AATCAATTCA CTGGGTTTAA AAAAGTTGGG GATCGATGAA
AATTCAACGG CGCCGGAAGG GGGCATAATA GTCAAGGACA AAGACGGGCA ACCTACTGGT
GTGCTGAGAG AAACTGCCGC AAACATGGCG TACGAAATAG CACTTAAAGA TCTTCCAAAG
GGTAGAGAAT TGATCAACAG TGGGATAAAA CCTATCTTTT CTCAACTCAA CCAGTTCGGA
ATTACCAGCA TCACTGATGC TTGGGCACGT GCCTATATGT TAGATGCTTA TAAAACATTG
GCGGATAGCG GTGAACTTAC GCTCAGGATT AAGGCATATA TTGCAGATCC AATAGAGTGG
CTGAGCCCGG AATGGAAAGA GGCCGCAAGC AATGCGATAG CAAATCACCA AGCCTATAAA
GTTGACCACT GGCTGAATGC CGATGGAGTC AAGTTTGTTC TCGATGGTTC AGCCGGCGGT
CAAACCATAA TTATGGTTGA GCCTTATGAA GGAACCAGCG ATCAGCATGG CGGCCCATGG
CGAAATGATC CCGACTACTT TGCTGAGAAA TTCAGCGAAT ATGACAAGAA AGGGCATGTG
ATGAAAGTGC ATGCCGTCGG TTCGCAATCT ATTCGAACGG CGCTCGATGC GATTGAAAAG
TCACGGGAGA ATGGTTCAAC ACTTAGACAT AATATTGCCC ATACGGTATT TGTTCACCCG
GATGACATTA AGCGCTTTAA AGAACATAAT GTCGGCGTCG AGTTTTCACC CCATTTTTGG
TATCCGGTTT CTGGCTGGGA CATTATTCGT GATGAGTTAG GGCAACGAAG ATTGGATTGG
GCATTTCCCT TTAAAACACT AAAAAATGAG GGGGTTGCTA TATCGGTTGG ATCGGATTGG
CCGGTCGCAG AATCTCCCAA TCCATTCTTA GAACTTGAGA CTATGGTTAC CAGGCAAGTA
CCAGGCGGAG GCGGGGAAAT TTTATCCGAT CCTAAAGAAC GTATATCCCT CAGCGATGCC
ATAGAAGTGT TTACTATCGG TGGGGCCTTC GCTCAAAACC GTGAGGACAT CATTGGGTCG
ATTGAAACCG GAAAACTCGC TGATTTTATT ATTTTGAATC AGAACCTATT CGAAATTGAG
ATAAATCAAG TGCATAAGAC TCGCGTGATA CAAACCGTGG TCGGTGGCAA GACCGTTTAT
GAAACTAAAA CTGAAACTGA GAAAGGGACC ACGAATGGAT CTACATTGTA A
 
Protein sequence
MKRIASILIN IGVIAFLSAC ADKNSGSDEQ INSQITKVYV NGRVYTQDNA APWAEGFVVI 
DDKFVAVGDA ESLKSWMTPE SETIDLAGQF VMPGFVEEHI HPDMATESYL GINIVPSMGW
EKVSHIIETF GEQKSDDKWI IGGALNWLAD NGEKMHQIDA LSHFTTLDKL INDKPLLLWD
VGGHAVLINS LGLKKLGIDE NSTAPEGGII VKDKDGQPTG VLRETAANMA YEIALKDLPK
GRELINSGIK PIFSQLNQFG ITSITDAWAR AYMLDAYKTL ADSGELTLRI KAYIADPIEW
LSPEWKEAAS NAIANHQAYK VDHWLNADGV KFVLDGSAGG QTIIMVEPYE GTSDQHGGPW
RNDPDYFAEK FSEYDKKGHV MKVHAVGSQS IRTALDAIEK SRENGSTLRH NIAHTVFVHP
DDIKRFKEHN VGVEFSPHFW YPVSGWDIIR DELGQRRLDW AFPFKTLKNE GVAISVGSDW
PVAESPNPFL ELETMVTRQV PGGGGEILSD PKERISLSDA IEVFTIGGAF AQNREDIIGS
IETGKLADFI ILNQNLFEIE INQVHKTRVI QTVVGGKTVY ETKTETEKGT TNGSTL