Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2225 |
Symbol | |
ID | 5612634 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2682061 |
End bp | 2683257 |
Gene Length | 1197 bp |
Protein Length | 398 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933129 |
Product | aromatic amino acid aminotransferase |
Protein accession | YP_001473962 |
Protein GI | 157375362 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1448] Aspartate/tyrosine/aromatic aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATATTTA CCCAGGTTGA ACTTGCTCCT GCAGATCCAA TTTTAGGCCT AACAGATGCA TTTAAAGCTG ATACCAGAAC AGAAAAAGTA AACCTTGGGG TAGGGATTTA TAAAGACGAA TCAGGCTCAA CACCTATATT AAAGTCCGTA AAGCTTGCCG AAGAGAAGAT CCTCGCAACA GAAAACAGCA AAAGTTATCT GGGCATCGAA GGTGTTCAGG CCTATAACCG TGTCGTTCAA GAGTTACTGT TTGGTGCTGA GCATAGTGTT GTAAAAAATA AGCGTGCCCT AACGGCTCAG GCTCCTGGCG GAACCGGCTC TTTAAGGGTC GCAGCAGAGT TTCTGGTACG TAATACCGAA TCTAAAACAA TTTGGGTAAG TAACCCAACT TGGGCAAATC ATCAAAATAT CTTTAAATCT GCTTCTCTGG GCATTCAGCA GTACCGTTAC TACAATGCTG AAACACATGG TAAAGACTTC GATGCCATGC TTACCGACCT GTCACAAGCA AAAGCCGGAG ATCTTGTCCT GCTGCATGGC TGCTGTCATA ACCCAACAGG CATAGATCTT AACGAAACAG AGTGGCAGCG TGTTGCTGAC CTATGTTTAA AACAAGATCT TGTACCACTG TTTGATTTCG CCTATCAGGG TTTTGGCGTA GGCATTAATG AAGATGCGAA AGGCTTAAGA ATTGTGGCAG ATACAGTGCC TGAACTATTG ATAGCAAATT CATTCTCGAA AAACTTCGGT CTTTACAATG AACGAATAGG TGCTGTGACC TTAGTCGCCG ATACCGAAAC AACCGTAGCC AAGGCATTCA GTCAGGTAAA GAGTACCATT CGCGGTAATT ATTCAAACCC ACCTGCACAC GGCGCCCTGA TCGTCAGCAC TATCCTCGCC GATGAAGAGT TAAAGTCATT ATGGGAGTCT GAGCTTAAAG AGATGCGTGA ACGTATTGCA AAAATGCGTA CACTCTTTGT CGAATCACTG AAAGCGGAAG GTGTCACTCA AGACTTCAGC TTCATCTCAA GACAAAATGG TATGTTCAGC TTCTCAGGAT TAACGAAAGA GCAGGTCACG CAGCTCAAAG AGGTGCATGC AGTTTATATC GTAGGATCCG GACGGATCAG TGTAGCCGGT ATGACTCGAA CCAACATGCC CGTTATCTGT AAAGCCATCG CCAAGGTTCT TGCCTAG
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Protein sequence | MIFTQVELAP ADPILGLTDA FKADTRTEKV NLGVGIYKDE SGSTPILKSV KLAEEKILAT ENSKSYLGIE GVQAYNRVVQ ELLFGAEHSV VKNKRALTAQ APGGTGSLRV AAEFLVRNTE SKTIWVSNPT WANHQNIFKS ASLGIQQYRY YNAETHGKDF DAMLTDLSQA KAGDLVLLHG CCHNPTGIDL NETEWQRVAD LCLKQDLVPL FDFAYQGFGV GINEDAKGLR IVADTVPELL IANSFSKNFG LYNERIGAVT LVADTETTVA KAFSQVKSTI RGNYSNPPAH GALIVSTILA DEELKSLWES ELKEMRERIA KMRTLFVESL KAEGVTQDFS FISRQNGMFS FSGLTKEQVT QLKEVHAVYI VGSGRISVAG MTRTNMPVIC KAIAKVLA
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