| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2220 |
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| Symbol | |
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| ID | 5612763 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2677419 |
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| End bp | 2678351 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933124 |
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| Product | universal stress protein UspE |
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| Protein accession | YP_001473957 |
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| Protein GI | 157375357 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.875118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGGACT ATAAAAAGCT CTTAGTTGTT GTCGATCCGA CTAGCGATAA GCAACCCGCG
CTTGCTCGCG CCGTTGAACT TGCTTCAAAA AATCAGGCCG CTATAACCGT ATTTCTATCA
ATTTTTGATT TCTCCTATGA GATGACTTCA ATACTCTCGG GTCATGAACG TGAAGCGATG
AGACAAGGTG TTATTGCCCA GCGCAAGGCA TGGATAGAGG ACTTAGTCGA AGCCTATTCT
AAAGCTGACA CCGTGATTGA AACTGAGGTC ATTTGGCATA ACCGCCCTTT CGAGAGCATT
ATCCAGCATG CCATCGCCGG TGAGTATGAT CTTATCGTCA AGGGGACCCA TGAACATGAC
AAGCTTAAGT CTGTTATCTT TACTCCAACT GATTGGCACC TTATGCGTAA GGCGCCCGTA
CCAGTCTTGT TGGTTAAAGA ACATGATTGG CCTGTCGCAG GTAAAATACT CTGTGCCGTT
AATGTCGGCT CCGAAGATGA CGATCACCAG TCATTAAACG GCAAGATAAT TGAGCATGCA
CAAGGCCTGG CTCAAAAGTT TGATGCTCAG GTGCACCTTG TTAATGGTTA TCCGGGAACG
CCGGTTAATC TGGCCATTGA GCTTCCGGAC TTCGATGCAC ATACCTATAG TGAGACTATT
CGTATGCAGC ATGAACAGCG AGTCGGTTCT TTGGCGAATA CCTTTGGGAT CTCTACCGAT
TTTTGTCATG TTAAAGAAGG TTTACCTGAG GATGTCATCC CGGATCTAGC CCTGCAGCTG
GACGCAGAAC TCGTGATATT AGGTACCGTA GGTCGTACCG GTTTCTCTGC AGCACTCATC
GGCAATACAG CTGAACATGT TATCGATAGT ATTAACTGTG ATCTGTTGGC TATTAAACCC
GATGGTTACC ATTCACCATT AGAAGAGAGT TAA
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| Protein sequence | MKDYKKLLVV VDPTSDKQPA LARAVELASK NQAAITVFLS IFDFSYEMTS ILSGHEREAM
RQGVIAQRKA WIEDLVEAYS KADTVIETEV IWHNRPFESI IQHAIAGEYD LIVKGTHEHD
KLKSVIFTPT DWHLMRKAPV PVLLVKEHDW PVAGKILCAV NVGSEDDDHQ SLNGKIIEHA
QGLAQKFDAQ VHLVNGYPGT PVNLAIELPD FDAHTYSETI RMQHEQRVGS LANTFGISTD
FCHVKEGLPE DVIPDLALQL DAELVILGTV GRTGFSAALI GNTAEHVIDS INCDLLAIKP
DGYHSPLEES
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