| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2165 |
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| Symbol | |
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| ID | 5610006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2616832 |
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| End bp | 2618682 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640933069 |
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| Product | TonB-dependent vitamin B12 receptor |
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| Protein accession | YP_001473902 |
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| Protein GI | 157375302 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | [TIGR01779] TonB-dependent vitamin B12 receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTA AACTGCGACT CTCAGTACTA ACTATCGCGA TATGCCAGAC ATTTTCAGCC
GCCGCTACAG CACCAGCCAA TCCCGTAGAT GATATTATTA CGGTAACGGG TGACAGATTT
GACAACACTG CGGATCAGCA ACTCACCGTT ATCAATACCA TCGAGAGAGA GGAGATAGCC
AGACTCAACC CTAAGTCTGT GGTTGATATG TTAGAAACCT TACCTGGCGT CAGTGTGACC
CGCAATGGCG GCGCCGGACA ATCCGCTTCC ATTAGCATGC GTGGAACAAA CACCGATCAT
GTATTGGTTC TCGTAGACGG TGTTCGTATC GGCTCGGCAA CCCTGGGCGC TGTGAGTTTC
AACGCCCTCA CCCCTGAAAA TATTGAACGT ATCGAAGTCG TTAAAGGCCC AAGAGCCGCT
GTTTGGGGCA GCGACGCCAT CGGTGGTGTT ATTCAGATTT TCACCCGTAA ATTAGAGGGC
GGTGAATGGT ATGCCTCTGC CGAATATGGC AGTGATGACT ATATGCGCGC CAGTGCCGGT
GCGGGCGTAA GCCACGGTGA CGGCCATACC AGCATCAGCA TCAATCGTGA AAAGAGCGAT
GGATACGATA TTAAAAACGA TGCAGAAGAT GACAATGACG GTTACGACCG TTTGGGCGTG
AGCGTTAACG GCCTGCAAAA CCTTAATCAG CAATGGCAGC TTACCTGGGC AGGTCAACTG
GAGAGCGGTA ACTACGAGTA TGACAATATG GGTTATTACG GGCCCGGTGT TAATGAGGCC
GACTACGATA ACTACCTGGT GAACATCGCG GCGCAATATC AAACAGAGAA GTTAACCAGC
AAGTTGGCCC TTGGTCAATC ACGGGATAAG AATGAGAACT TTCGCGCAGA AGACCCGAGT
TTAGGCGTCA ATTTATATGA AACGACCCGT GATCAGCTCA ACTGGAGTAA CCGATACACG
GCAAACGATG ACCTGACCTT CATTGGCGGC GTCGACTGGT CGAAGGAATC TATCGAGGGT
GACTATGCCG TCGACGAGCG CGATCTACTT GGCATCTATG GCCTGGCACG CTACCAAATT
GGCAAACTCT TGATGGAAGG AGTTATTCGC TACGACGATG TTGAAAATAT CGATAGCGAA
ACCTCATATA ACGCGAGTCT GGCCTATCAA TTCAATGACC AATGGCGTGT TACTGCCAGT
TCAGGAACAG GCTTCAAGGC CCCAAGTTTC AATGACCTCT ATTGGCCAGA TTCAGGTAAT
CCGGAGCTGG TATCTGAGAC ATCCGAAAAT CTGGATCTCA CCATCAGCTA TACCGGCGAT
TACCTGCGTG GTTACTTGAG TATCTACCAA AACAAGATTG ATAACCTGAT CCAGTGGGCC
CCTACAGGTG AGAAAGATGA TTATGGCTAC GATATCTGGA AACCGGACAA TATTGAAGAT
GCCGAGATAA CCGGAGTAGA ACTCTCCCTT AACTACAGCA CCTGGGATAT TGAACATCAG
CTGGGTTACA GCTACATCGA CGCGGTAGAT GGGGAAAGTG ACGAACAGTT AGTGGGCCGA
AGCGAACATG AGTTTGATTA TGCGCTCAGC TATACCTGGT CTGAGTTCGA TCTGCTGGTT
AACTATCACT ATCAGGGCGA GCGTAACGCC GGCGATTATG ACTATGACGG CGTGACTGAC
TTCCTGGATG CCTACCATCA GGTCGACATG AGTATCGGTT ATAAGCTTGC CGAAGCATGG
CAACTCAGGT TGAAGGCCAA TAACCTGCTC GATGAAGAGA TCATCTCAGA TCGTAACTAC
TTCAGCCCCG GCCGCCAACT GTTTTTAAGC GTGAGCTACC AGGCTTTTTA A
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| Protein sequence | MSFKLRLSVL TIAICQTFSA AATAPANPVD DIITVTGDRF DNTADQQLTV INTIEREEIA
RLNPKSVVDM LETLPGVSVT RNGGAGQSAS ISMRGTNTDH VLVLVDGVRI GSATLGAVSF
NALTPENIER IEVVKGPRAA VWGSDAIGGV IQIFTRKLEG GEWYASAEYG SDDYMRASAG
AGVSHGDGHT SISINREKSD GYDIKNDAED DNDGYDRLGV SVNGLQNLNQ QWQLTWAGQL
ESGNYEYDNM GYYGPGVNEA DYDNYLVNIA AQYQTEKLTS KLALGQSRDK NENFRAEDPS
LGVNLYETTR DQLNWSNRYT ANDDLTFIGG VDWSKESIEG DYAVDERDLL GIYGLARYQI
GKLLMEGVIR YDDVENIDSE TSYNASLAYQ FNDQWRVTAS SGTGFKAPSF NDLYWPDSGN
PELVSETSEN LDLTISYTGD YLRGYLSIYQ NKIDNLIQWA PTGEKDDYGY DIWKPDNIED
AEITGVELSL NYSTWDIEHQ LGYSYIDAVD GESDEQLVGR SEHEFDYALS YTWSEFDLLV
NYHYQGERNA GDYDYDGVTD FLDAYHQVDM SIGYKLAEAW QLRLKANNLL DEEIISDRNY
FSPGRQLFLS VSYQAF
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