| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2137 |
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| Symbol | |
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| ID | 5610565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 2583472 |
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| End bp | 2584374 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640933040 |
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| Product | putative DNA-binding transcriptional regulator |
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| Protein accession | YP_001473874 |
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| Protein GI | 157375274 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00543742 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0202004 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTCTG AACAATCACT CCAATTAATC GATATGGTCG CTCGTGTCGG GAGTTTCACC
GCCGCGGCCA ACAAATTGCA CAAAGTTCCA TCGGCCGTCA GCTATGCGGT AAAACAGGTT
GAAGAGGAAC TTGGCGCCAT ATTATTTGAA CGCCACCATC GTAGTGTAAC GCTCACCCCG
GCTGGCGAAT CCTTCGTAAA ACAGGCAAGG TCTATTCTCA CCAATATGGC TGCCATGAAA
GATGATACCA AGCGAGTATC TAATGGTTGG CAACCCACAC TTTCTATCGC GTTAGATAAC
ATGGTCAGAG CCGATAAAAT AAGTGTATTA ATTGCCGATT TCTACCGCCA CTTCACCGAC
GTAGAGTTGA TCATTCGAAT AGAAGTGTTC AACGGCGTAT GGGAGTCAAT TGCCAATGGG
CGCAGCGATA TTGCTATCGG AGCAACGACG GCAATTCCAG TCGGTGGTGA TTACCACTTC
AAAGATATGG GCGACATAAA ATGGGCATTT TTAGTCGGTA AGAGGCACCC TCTTGCAGAG
GTTGACAGAC CACTAACCGA TGATGAATTG CGTCAATACC CTTCAATCTG TCTCGAAGAT
ACATCAAGAG AGATCCCAAA GCGTATGACC TGGTTACTCG AAAATCAGCG TCGGTTAGTA
GTGCCTGACT GGATACGTGC TATTAACTGT TTCAGGGAAG GTCTCGGTGT GGGTTACATG
CCAATGCATT TTGCCGAGCC CTTCATCAAA GCTGGCGCAC TCATACAGAA AGAGTTAGTC
ACGAAAAAAT CACCGAGTCC CTGTTGCCTG GCATGGAACG GTGCCAACAT GTCACCGGCT
ATGTCATGGG TACTTGAATA CCTGGGTGAT AGTGAAAAGT TACATAAAGA CTGGTTCCAT
TAA
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| Protein sequence | MLSEQSLQLI DMVARVGSFT AAANKLHKVP SAVSYAVKQV EEELGAILFE RHHRSVTLTP
AGESFVKQAR SILTNMAAMK DDTKRVSNGW QPTLSIALDN MVRADKISVL IADFYRHFTD
VELIIRIEVF NGVWESIANG RSDIAIGATT AIPVGGDYHF KDMGDIKWAF LVGKRHPLAE
VDRPLTDDEL RQYPSICLED TSREIPKRMT WLLENQRRLV VPDWIRAINC FREGLGVGYM
PMHFAEPFIK AGALIQKELV TKKSPSPCCL AWNGANMSPA MSWVLEYLGD SEKLHKDWFH
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