Gene Ssed_2120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2120 
Symbol 
ID5613690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2567679 
End bp2569607 
Gene Length1929 bp 
Protein Length642 aa 
Translation table11 
GC content44% 
IMG OID640933023 
Productthreonyl-tRNA synthetase 
Protein accessionYP_001473857 
Protein GI157375257 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0441] Threonyl-tRNA synthetase 
TIGRFAM ID[TIGR00418] threonyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.84166e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0496634 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTGTTA TTACACTTCC TGATGGAAGC AAACGTGAGT TTGCTAACCC TGTTTCTACT 
TTAGATGTCG CTGCCGATAT CGGTCCCGGT CTTGCTAAAG CATGTATCGC TGGTCGAGTT
AATGGTGAGC TTAAAGATGC TTGCGATATC ATTGACACCG ATTCAGAGCT TTCTATCATC
ACAGCAAAAG ACGAAGAGGG TGTAGAGATC CTTCGTCACT CTTGCGCGCA TCTACTCGGT
CATGCATTCA AGCAACTATG GCCTGAAGCT AAGATGGCTA TCGGTCCGGT TATCGATAAT
GGCTTTTACT ATGATATCGA TCTTGACCAC AAGCTTACTC AGGAAGATAT TGATGCGCTG
CAAAAGCGCA TGACCCAACT TGCAAAGACA AACTACAAAG TTGAAAAACG TGTAGGCAGT
TGGCAAGTGG CCCGCGATAC ATTCGAAGCT CGCGGCGAAA CATACAAGAT GGAAGTCTTG
GATGAAAACA TCAGTAAAGA CGACCAGCCA GCGTTATATC ATCATGAAGA GTATGTTGAT
ATGTGCCGTG GCCCTCATGT ACCAAACATG AAATTTTGTC AAAATTTTAA ACTGATGAGT
GTGGCCGGTG CATACTGGCG TGGTAACTCA GACAACAAGA TGCTACAACG TGTTTATGGT
ACTGCCTGGG CAGACAAAAA AGCACTTAAA GTACACCTTA ACCGTCTGGA AGAAGCGGCT
AAGCGTGATC ACCGTAAGAT TGGTAAGCAG CTCGACCTTT ATCATATGCA GGAAGAAGCG
CCTGGAATGG TATTTTGGCA TAACGATGGT TGGAGCTTGT TCTTAGAACT TGAAAAGTTT
ATTCGTCAAA AGTTAGGTCA ATACACATAC CAAGAAGTAA AAGGTCCGTT GATGATGGAC
CGTGTGCTTT GGGAACGTTC TGGTCACTGG GATAAGTACG CCGATGCCAT GTTCACGACT
AACTCAGAAA ACCGTGAATA TGCCATTAAG CCAATGAACT GTCCAGGTCA TGTACAGATC
TTTAATCAAG GGCTTAAGTC ATACCGCGAT CTACCATTGC GTATGGCCGA GTTTGGTTGT
TGTCACCGTA ATGAACCATC AGGTTCACTT CATGGTTTGA TGCGCGTACG TGGCTTCACT
CAAGATGATG CTCACGTCTT CTGTACTGAA GATCAAGTAC AGCAAGAGGT TAGTGCTTGT
ATCAAGATGG TATATGACAC CTATGAGACA TTTGGTTTCA AAGATATCGT CGTTAAACTA
TCGACTCGCC CAGAAAAGCG TATTGGCGAC GATGATATGT GGGACAGATC AGAGGAAGCA
CTTAAGCAAG CATTGACAGC CAATGGTATT GCTTATGAGA TCCTACCTGG TGAAGGGGCT
TTCTACGGAC CTAAGATTGA ATTTACGCTA CATGACTGTC TCGATCGTGC ATGGCAGTGT
GGTACGGTTC AGCTGGATTA CGCTTTACCG GGCCGTCTTG GTGCAACTTA TGTTGCCGAA
GATAACAGCC GTCAAACGCC AGTTATGATC CACCGTGCAA TTTTAGGTTC ATTAGAGCGC
TTCCTGGGTA TTCTTATTGA AGAGTATGCG GGTAAATTTC CTACTTGGTT GGCCCCAATG
CAAGTCGTAG TGATGAATAT CACCGATAAA CAGTCCGATT ATGTCGATGA AGTGGTAAAT
ATCTTCAAAG AAAGTGGAAT TCGTGCATCT AAAGACTTGA GGAATGAGAA GATAGGCTTT
AAAATACGCG AGCACACCTT AAGGCGTGTT CCTTATTTAT TGGTCGTCGG TGATCAAGAA
ATGGATAATA AGGAAGTTGC GGTGCGAACC CGAGATGGTG TTGACTTAGG TAAGATGCGA
ATCGAAGATT TCGCCTCTAA GATCAATGAA CAGATTTCGC TCCGTAGTCT CAATTTGTTG
GAGGATTAG
 
Protein sequence
MPVITLPDGS KREFANPVST LDVAADIGPG LAKACIAGRV NGELKDACDI IDTDSELSII 
TAKDEEGVEI LRHSCAHLLG HAFKQLWPEA KMAIGPVIDN GFYYDIDLDH KLTQEDIDAL
QKRMTQLAKT NYKVEKRVGS WQVARDTFEA RGETYKMEVL DENISKDDQP ALYHHEEYVD
MCRGPHVPNM KFCQNFKLMS VAGAYWRGNS DNKMLQRVYG TAWADKKALK VHLNRLEEAA
KRDHRKIGKQ LDLYHMQEEA PGMVFWHNDG WSLFLELEKF IRQKLGQYTY QEVKGPLMMD
RVLWERSGHW DKYADAMFTT NSENREYAIK PMNCPGHVQI FNQGLKSYRD LPLRMAEFGC
CHRNEPSGSL HGLMRVRGFT QDDAHVFCTE DQVQQEVSAC IKMVYDTYET FGFKDIVVKL
STRPEKRIGD DDMWDRSEEA LKQALTANGI AYEILPGEGA FYGPKIEFTL HDCLDRAWQC
GTVQLDYALP GRLGATYVAE DNSRQTPVMI HRAILGSLER FLGILIEEYA GKFPTWLAPM
QVVVMNITDK QSDYVDEVVN IFKESGIRAS KDLRNEKIGF KIREHTLRRV PYLLVVGDQE
MDNKEVAVRT RDGVDLGKMR IEDFASKINE QISLRSLNLL ED