Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2116 |
Symbol | |
ID | 5609952 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2562300 |
End bp | 2562800 |
Gene Length | 501 bp |
Protein Length | 166 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933013 |
Product | hypothetical protein |
Protein accession | YP_001473853 |
Protein GI | 157375253 |
COG category | [S] Function unknown |
COG ID | [COG4628] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0234268 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.096624 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGAAC AGCAACAAAA CAACCCATTA CATGGCCTAA GTCTTGAGAC CATGCTCACT GAGTTAGTCG ATTTTTATGA TTGGAAGATT TTAGACGCGG CATTGCGTTT AGCGTGTTTC AAGACCAATC CGAATATGCC TGCCTGTCTT AAGTTTTTGA AAAAGACCGA GTGGGCGAGG GAGCGTGTAG AAGCTTTCTA CCTATATCGT TTTAAGCGTA TGCCTAAAGG CAGTGCGGCT CAGTTTGAGC TTAAGCCGCG TGAACGTGGT TTTGAAGACG GTATTGTGCC GCGCAAACCT CAAGAGTTAA CGGTTGAACT TATTGCAGAT ATGCGTGCTA AGGCAACCGC TGATTATGAA GCGATGAAAC AAAATAAGGG CAGTCGACCA CGTTACGGTA GCGATAAGCC AAGAGCCCAA GATTCTTACG CTCAGAATCG TAGCTCAAGT CATAATAAAC CTGCACCGTC GCAAGATCCA AAAAACCCTT GGGGTAAGTA G
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Protein sequence | MIEQQQNNPL HGLSLETMLT ELVDFYDWKI LDAALRLACF KTNPNMPACL KFLKKTEWAR ERVEAFYLYR FKRMPKGSAA QFELKPRERG FEDGIVPRKP QELTVELIAD MRAKATADYE AMKQNKGSRP RYGSDKPRAQ DSYAQNRSSS HNKPAPSQDP KNPWGK
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