Gene Ssed_2116 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2116 
Symbol 
ID5609952 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2562300 
End bp2562800 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content45% 
IMG OID640933013 
Producthypothetical protein 
Protein accessionYP_001473853 
Protein GI157375253 
COG category[S] Function unknown 
COG ID[COG4628] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0234268 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.096624 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAGAAC AGCAACAAAA CAACCCATTA CATGGCCTAA GTCTTGAGAC CATGCTCACT 
GAGTTAGTCG ATTTTTATGA TTGGAAGATT TTAGACGCGG CATTGCGTTT AGCGTGTTTC
AAGACCAATC CGAATATGCC TGCCTGTCTT AAGTTTTTGA AAAAGACCGA GTGGGCGAGG
GAGCGTGTAG AAGCTTTCTA CCTATATCGT TTTAAGCGTA TGCCTAAAGG CAGTGCGGCT
CAGTTTGAGC TTAAGCCGCG TGAACGTGGT TTTGAAGACG GTATTGTGCC GCGCAAACCT
CAAGAGTTAA CGGTTGAACT TATTGCAGAT ATGCGTGCTA AGGCAACCGC TGATTATGAA
GCGATGAAAC AAAATAAGGG CAGTCGACCA CGTTACGGTA GCGATAAGCC AAGAGCCCAA
GATTCTTACG CTCAGAATCG TAGCTCAAGT CATAATAAAC CTGCACCGTC GCAAGATCCA
AAAAACCCTT GGGGTAAGTA G
 
Protein sequence
MIEQQQNNPL HGLSLETMLT ELVDFYDWKI LDAALRLACF KTNPNMPACL KFLKKTEWAR 
ERVEAFYLYR FKRMPKGSAA QFELKPRERG FEDGIVPRKP QELTVELIAD MRAKATADYE
AMKQNKGSRP RYGSDKPRAQ DSYAQNRSSS HNKPAPSQDP KNPWGK