Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2093 |
Symbol | |
ID | 5610507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2534950 |
End bp | 2535555 |
Gene Length | 606 bp |
Protein Length | 201 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932990 |
Product | cobalamin (vitamin B12) biosynthesis CbiM protein |
Protein accession | YP_001473830 |
Protein GI | 157375230 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0310] ABC-type Co2+ transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00179951 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATATAG CTGACGGAGT ATTAGCAACG CCGGTATTAG TGGCCGGAAT CGCCATGACC TTAGCCGGAA CGACACTGGG GTTAAAAAAA CTCGATGATG ACAAAATTCC TTTTGCGGCC GTACTCTCGG CTTGCTTCTT TGTCGCATCA CTTATTCATT TGCCCCTTGG GCCTTCGAGT GTGCACTTGA TATTCAATGG GTTAATCGGA CTGTTATTAG GCTGGCTGGC TTTTCCTGTC ATGCTGATCG CCCTGATACT GCAGGCGATG TTTTTCGGTT TTGGAGGCAT TGTCGTACTT GGGGTTAATT GCCTGAATAT CGCCTTGCCG GCGGTAATGG TTGGTGCTCT GTTAAGGCCA ATGAGACATC ATATCCCTGC TCAGTTACTG GGTTTTTTGG CCGGTAGTGG GGCGGTATTA TTAACCGGCA TTATGGTGTC GTCATCTCTT TATCTCTCTG GAGAGGCATT TAGTAAAACG GCAAACGTCG TATTTTGGGG CAATCTTCCA CTGTCTTTAC TGGAAGGCGT GATATCCGGT TTTATTATCG TACTCATTAA TCAGGTTAAG CCTGAAATTC TCAAGGGAGT CCACTCCAAT GTATAA
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Protein sequence | MHIADGVLAT PVLVAGIAMT LAGTTLGLKK LDDDKIPFAA VLSACFFVAS LIHLPLGPSS VHLIFNGLIG LLLGWLAFPV MLIALILQAM FFGFGGIVVL GVNCLNIALP AVMVGALLRP MRHHIPAQLL GFLAGSGAVL LTGIMVSSSL YLSGEAFSKT ANVVFWGNLP LSLLEGVISG FIIVLINQVK PEILKGVHSN V
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