Gene Ssed_2093 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2093 
Symbol 
ID5610507 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2534950 
End bp2535555 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content47% 
IMG OID640932990 
Productcobalamin (vitamin B12) biosynthesis CbiM protein 
Protein accessionYP_001473830 
Protein GI157375230 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0310] ABC-type Co2+ transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00179951 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATATAG CTGACGGAGT ATTAGCAACG CCGGTATTAG TGGCCGGAAT CGCCATGACC 
TTAGCCGGAA CGACACTGGG GTTAAAAAAA CTCGATGATG ACAAAATTCC TTTTGCGGCC
GTACTCTCGG CTTGCTTCTT TGTCGCATCA CTTATTCATT TGCCCCTTGG GCCTTCGAGT
GTGCACTTGA TATTCAATGG GTTAATCGGA CTGTTATTAG GCTGGCTGGC TTTTCCTGTC
ATGCTGATCG CCCTGATACT GCAGGCGATG TTTTTCGGTT TTGGAGGCAT TGTCGTACTT
GGGGTTAATT GCCTGAATAT CGCCTTGCCG GCGGTAATGG TTGGTGCTCT GTTAAGGCCA
ATGAGACATC ATATCCCTGC TCAGTTACTG GGTTTTTTGG CCGGTAGTGG GGCGGTATTA
TTAACCGGCA TTATGGTGTC GTCATCTCTT TATCTCTCTG GAGAGGCATT TAGTAAAACG
GCAAACGTCG TATTTTGGGG CAATCTTCCA CTGTCTTTAC TGGAAGGCGT GATATCCGGT
TTTATTATCG TACTCATTAA TCAGGTTAAG CCTGAAATTC TCAAGGGAGT CCACTCCAAT
GTATAA
 
Protein sequence
MHIADGVLAT PVLVAGIAMT LAGTTLGLKK LDDDKIPFAA VLSACFFVAS LIHLPLGPSS 
VHLIFNGLIG LLLGWLAFPV MLIALILQAM FFGFGGIVVL GVNCLNIALP AVMVGALLRP
MRHHIPAQLL GFLAGSGAVL LTGIMVSSSL YLSGEAFSKT ANVVFWGNLP LSLLEGVISG
FIIVLINQVK PEILKGVHSN V