Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2067 |
Symbol | |
ID | 5614118 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2502628 |
End bp | 2504904 |
Gene Length | 2277 bp |
Protein Length | 758 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640932964 |
Product | acyl-CoA dehydrogenase |
Protein accession | YP_001473804 |
Protein GI | 157375204 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0937287 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000695411 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGACTCTAC TCATACTTGC ACTACTCGTA ATCATTGTGC TTTTTGGTGT CAAAAACATC AGGATGCAGT TTATCACTCG TCCGATTTTT TCATTTTTTA AGAAGTTACT TCCGCCTTTG TCCGATACAG AAAAAGAGGC GATGGAAGCC GGCGATGTTT GGTGGGAAGG TGAACTTTTC AGGGGTAAGC CTAACTGGGA AACACTACAT AGCTACGGTA AGCCTAAGCT GACCAATGAG GAACAAGATT TTATCGACAA TCAGGTCATG ACGGCACTGA CCATGATTGA TGATTTCGAT ATTGTTCACA ACCGTAAAGA CCTGCCACCA GAGCTTTGGG AATACTTTAA GAAAGAAGGC TTCTTTGCTC TTATCATCCC AAAGCAATAT GGAGGTAAGG CATTCTCGGC TTATGCTAAC TCAACTATTG TTGCTAAATT AGCCAGCCGA AGTGTAAGTG CGGCCGTGAC GGTAATGGTG CCTAATTCTT TAGGACCGGG CGAACTTCTT ACCCATTATG GTACACAAGA GCAGCGCGAA AATTGGTTAC CTAAACTCGC CTCTGGTGAA GCGGTGCCTT GCTTTGCATT AACGGGTCCC GAAGCGGGCT CTGATGCTGG CGCGATTCCG GATGAAGGCA TCGTCTGTCG ACAGGAGTTT GAAGGTGAAG AGGTATTAGG ATTAAAACTT AACTGGGATA AGCGTTACAT TACGCTGGCG CCGGTTGCTA CAGTATTGGG GCTCGCCTTT CAAATGCGCG ATCCCGACGG CCTACTGGGT GATAAAGAAG CCCTTGGTAT CACATGTGCC CTGATCCCAA CGGATCATCC GGGTGTGAAA GTGGGTCAGC GACATAACCC ACTGGGCATG GCATTTATGA ATGGCACCAC ATACGGAGAA GATGTCTTTA TCCCGCTGGA TTGGATCATC GGTGGTCCAC AATACGCGGG CAGAGGTTGG AGAATGCTGG TTGAGTGTCT CTCTGCCGGC CGAGGGATCT CATTGCCTGC ACTGGCAACG GCTTGCGGTC ACACAGCCAC TAAGACCACT ACCGCCTACA GCTATGTACG TCATCAATTT GGTTTATCAA TTGGTCAGTT TGAAGGTGTT CAAGAGGCAT TGGCCAGAAT CGTTGCCAAT ACTTATCAGC TTGAAGCGGC AAGGCGTCTG ACGACTACAG GTATTGACCT GAAGGTGAAG CCATCGGTTG TCACTGCGAT CGCAAAGTAT CATATGACAG AGATGAGCCG TGATGTGCTT AATGATGCGA TGGATATTCA GTCAGGCAAA GGGATCCAAC TTGGACCGAA AAACTATTTA GGTCATCCTT ATATGGCCAA CCCTATTTCG ATTACGGTCG AAGGGGCAAA TATTTTGACC CGCAGTTTGA TGATCTTTGG CCAGGGCGCG ACACGTTGTC ACCCTTATGT ACTTGCTGAG ATGGAAACTG CCGCCATGGA AGATTCCAGC GCGGCATTGG AAAGGTTTGA TTCTCTACTG TTAGGCCATA TTGGCTACGG TGCCCGAAAT GCGTTTAGTT CGCTATTTTG CGCATTAACC GGCAGCCGAT TCAATCAATC GCCGGTTAGC GGTGAAACAC AGCAATATTA TAAGGATATG ACCAGGCTTT CGTCGGGTCT GGCCTTCATC ACAGATCTTT CTATGTTGAT CATGGGCGGT GACCTTAAGC GCAAAGAGAT GTTGTCAGCA AGATTGGGTG ATGTGCTCAG CGAATTATAC TTAGGTTCTG CGACCTTAAA GCTGTTCGAA GATAATGGCC GTCAGCAAGA TGATCTCCCT GCCGTACGAT TTGTGATGGC AACCCGATTA CAGAAAGCGG CAAAAGCCTT GGATGGTGCG TTGCGTAACT TCCCGAATCG CCCTGTTGCT TGGGTAATGA GAGCCTTGAT TTTCCCTATA GGTAATCATT TTAATGGTCC TACGGATAAA ATGACGACAG ATTTAGCTAA GGGAATGTTG CAACCTGGAC CTGCCAGAGA CAGGCTTACA TTCCTTTGTC CCGAGTTTGA CGGTGATAAA GGTGGTATTG CCGAGGTTGA AGATGCATTT CTTGCTCAAT TTGAATGCCG CAACACTTAT AAGAAGATCA AAAAAGCTCA GCGTGCGGGA ACCTTACCTA AGAAAATGAG CAACATGGCA CTCTTTGAGA TGGCTCTTGA GGTATCAATC ATCAATAAAG GTGAGTTTGA AGCTATTATG AACGCAGACA AATTACGTTT AATCGCGATT CATGTTGATG AGTTTGAAAC GCTGTAA
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Protein sequence | MTLLILALLV IIVLFGVKNI RMQFITRPIF SFFKKLLPPL SDTEKEAMEA GDVWWEGELF RGKPNWETLH SYGKPKLTNE EQDFIDNQVM TALTMIDDFD IVHNRKDLPP ELWEYFKKEG FFALIIPKQY GGKAFSAYAN STIVAKLASR SVSAAVTVMV PNSLGPGELL THYGTQEQRE NWLPKLASGE AVPCFALTGP EAGSDAGAIP DEGIVCRQEF EGEEVLGLKL NWDKRYITLA PVATVLGLAF QMRDPDGLLG DKEALGITCA LIPTDHPGVK VGQRHNPLGM AFMNGTTYGE DVFIPLDWII GGPQYAGRGW RMLVECLSAG RGISLPALAT ACGHTATKTT TAYSYVRHQF GLSIGQFEGV QEALARIVAN TYQLEAARRL TTTGIDLKVK PSVVTAIAKY HMTEMSRDVL NDAMDIQSGK GIQLGPKNYL GHPYMANPIS ITVEGANILT RSLMIFGQGA TRCHPYVLAE METAAMEDSS AALERFDSLL LGHIGYGARN AFSSLFCALT GSRFNQSPVS GETQQYYKDM TRLSSGLAFI TDLSMLIMGG DLKRKEMLSA RLGDVLSELY LGSATLKLFE DNGRQQDDLP AVRFVMATRL QKAAKALDGA LRNFPNRPVA WVMRALIFPI GNHFNGPTDK MTTDLAKGML QPGPARDRLT FLCPEFDGDK GGIAEVEDAF LAQFECRNTY KKIKKAQRAG TLPKKMSNMA LFEMALEVSI INKGEFEAIM NADKLRLIAI HVDEFETL
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