Gene Ssed_2067 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_2067 
Symbol 
ID5614118 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp2502628 
End bp2504904 
Gene Length2277 bp 
Protein Length758 aa 
Translation table11 
GC content47% 
IMG OID640932964 
Productacyl-CoA dehydrogenase 
Protein accessionYP_001473804 
Protein GI157375204 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0937287 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value6.95411e-05 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACTCTAC TCATACTTGC ACTACTCGTA ATCATTGTGC TTTTTGGTGT CAAAAACATC 
AGGATGCAGT TTATCACTCG TCCGATTTTT TCATTTTTTA AGAAGTTACT TCCGCCTTTG
TCCGATACAG AAAAAGAGGC GATGGAAGCC GGCGATGTTT GGTGGGAAGG TGAACTTTTC
AGGGGTAAGC CTAACTGGGA AACACTACAT AGCTACGGTA AGCCTAAGCT GACCAATGAG
GAACAAGATT TTATCGACAA TCAGGTCATG ACGGCACTGA CCATGATTGA TGATTTCGAT
ATTGTTCACA ACCGTAAAGA CCTGCCACCA GAGCTTTGGG AATACTTTAA GAAAGAAGGC
TTCTTTGCTC TTATCATCCC AAAGCAATAT GGAGGTAAGG CATTCTCGGC TTATGCTAAC
TCAACTATTG TTGCTAAATT AGCCAGCCGA AGTGTAAGTG CGGCCGTGAC GGTAATGGTG
CCTAATTCTT TAGGACCGGG CGAACTTCTT ACCCATTATG GTACACAAGA GCAGCGCGAA
AATTGGTTAC CTAAACTCGC CTCTGGTGAA GCGGTGCCTT GCTTTGCATT AACGGGTCCC
GAAGCGGGCT CTGATGCTGG CGCGATTCCG GATGAAGGCA TCGTCTGTCG ACAGGAGTTT
GAAGGTGAAG AGGTATTAGG ATTAAAACTT AACTGGGATA AGCGTTACAT TACGCTGGCG
CCGGTTGCTA CAGTATTGGG GCTCGCCTTT CAAATGCGCG ATCCCGACGG CCTACTGGGT
GATAAAGAAG CCCTTGGTAT CACATGTGCC CTGATCCCAA CGGATCATCC GGGTGTGAAA
GTGGGTCAGC GACATAACCC ACTGGGCATG GCATTTATGA ATGGCACCAC ATACGGAGAA
GATGTCTTTA TCCCGCTGGA TTGGATCATC GGTGGTCCAC AATACGCGGG CAGAGGTTGG
AGAATGCTGG TTGAGTGTCT CTCTGCCGGC CGAGGGATCT CATTGCCTGC ACTGGCAACG
GCTTGCGGTC ACACAGCCAC TAAGACCACT ACCGCCTACA GCTATGTACG TCATCAATTT
GGTTTATCAA TTGGTCAGTT TGAAGGTGTT CAAGAGGCAT TGGCCAGAAT CGTTGCCAAT
ACTTATCAGC TTGAAGCGGC AAGGCGTCTG ACGACTACAG GTATTGACCT GAAGGTGAAG
CCATCGGTTG TCACTGCGAT CGCAAAGTAT CATATGACAG AGATGAGCCG TGATGTGCTT
AATGATGCGA TGGATATTCA GTCAGGCAAA GGGATCCAAC TTGGACCGAA AAACTATTTA
GGTCATCCTT ATATGGCCAA CCCTATTTCG ATTACGGTCG AAGGGGCAAA TATTTTGACC
CGCAGTTTGA TGATCTTTGG CCAGGGCGCG ACACGTTGTC ACCCTTATGT ACTTGCTGAG
ATGGAAACTG CCGCCATGGA AGATTCCAGC GCGGCATTGG AAAGGTTTGA TTCTCTACTG
TTAGGCCATA TTGGCTACGG TGCCCGAAAT GCGTTTAGTT CGCTATTTTG CGCATTAACC
GGCAGCCGAT TCAATCAATC GCCGGTTAGC GGTGAAACAC AGCAATATTA TAAGGATATG
ACCAGGCTTT CGTCGGGTCT GGCCTTCATC ACAGATCTTT CTATGTTGAT CATGGGCGGT
GACCTTAAGC GCAAAGAGAT GTTGTCAGCA AGATTGGGTG ATGTGCTCAG CGAATTATAC
TTAGGTTCTG CGACCTTAAA GCTGTTCGAA GATAATGGCC GTCAGCAAGA TGATCTCCCT
GCCGTACGAT TTGTGATGGC AACCCGATTA CAGAAAGCGG CAAAAGCCTT GGATGGTGCG
TTGCGTAACT TCCCGAATCG CCCTGTTGCT TGGGTAATGA GAGCCTTGAT TTTCCCTATA
GGTAATCATT TTAATGGTCC TACGGATAAA ATGACGACAG ATTTAGCTAA GGGAATGTTG
CAACCTGGAC CTGCCAGAGA CAGGCTTACA TTCCTTTGTC CCGAGTTTGA CGGTGATAAA
GGTGGTATTG CCGAGGTTGA AGATGCATTT CTTGCTCAAT TTGAATGCCG CAACACTTAT
AAGAAGATCA AAAAAGCTCA GCGTGCGGGA ACCTTACCTA AGAAAATGAG CAACATGGCA
CTCTTTGAGA TGGCTCTTGA GGTATCAATC ATCAATAAAG GTGAGTTTGA AGCTATTATG
AACGCAGACA AATTACGTTT AATCGCGATT CATGTTGATG AGTTTGAAAC GCTGTAA
 
Protein sequence
MTLLILALLV IIVLFGVKNI RMQFITRPIF SFFKKLLPPL SDTEKEAMEA GDVWWEGELF 
RGKPNWETLH SYGKPKLTNE EQDFIDNQVM TALTMIDDFD IVHNRKDLPP ELWEYFKKEG
FFALIIPKQY GGKAFSAYAN STIVAKLASR SVSAAVTVMV PNSLGPGELL THYGTQEQRE
NWLPKLASGE AVPCFALTGP EAGSDAGAIP DEGIVCRQEF EGEEVLGLKL NWDKRYITLA
PVATVLGLAF QMRDPDGLLG DKEALGITCA LIPTDHPGVK VGQRHNPLGM AFMNGTTYGE
DVFIPLDWII GGPQYAGRGW RMLVECLSAG RGISLPALAT ACGHTATKTT TAYSYVRHQF
GLSIGQFEGV QEALARIVAN TYQLEAARRL TTTGIDLKVK PSVVTAIAKY HMTEMSRDVL
NDAMDIQSGK GIQLGPKNYL GHPYMANPIS ITVEGANILT RSLMIFGQGA TRCHPYVLAE
METAAMEDSS AALERFDSLL LGHIGYGARN AFSSLFCALT GSRFNQSPVS GETQQYYKDM
TRLSSGLAFI TDLSMLIMGG DLKRKEMLSA RLGDVLSELY LGSATLKLFE DNGRQQDDLP
AVRFVMATRL QKAAKALDGA LRNFPNRPVA WVMRALIFPI GNHFNGPTDK MTTDLAKGML
QPGPARDRLT FLCPEFDGDK GGIAEVEDAF LAQFECRNTY KKIKKAQRAG TLPKKMSNMA
LFEMALEVSI INKGEFEAIM NADKLRLIAI HVDEFETL