| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2062 |
|---|
| Symbol | |
|---|
| ID | 5612270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2497435 |
|---|
| End bp | 2498352 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640932959 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473799 |
|---|
| Protein GI | 157375199 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3965] Predicted Co/Zn/Cd cation transporters |
|---|
| TIGRFAM ID | [TIGR01297] cation diffusion facilitator family transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00314891 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGATA AAATTGGATC TATTGAGCGC CAATCGATTT CTATCGGTAT TGTGGCTAAC
TTGGTGATGG CATTGAGTGG GTGGGCTACC TTTTATCTTT CTGGCTCTCA GGCTTTACTG
CTCGACGGTA ACATGTCATT TATTCTGTTT TTATCTTCGA TAGTGGCGCT GAAAATATCG
AAAATTAAGA CTATTCGCTC GGAGAAATTC CCCTTTGGTT TGTACGTGAC CGAAGCGCTG
TATTCACTGA TGAAAGGCTT GTTGCTGCTC GGCGTTATCA TCTCGGCTAT CACCTCTAAC
GCCAGTAAGA TCTTCCAATA CCTGGAAGGA GAGCCGATTA ACATGATAAA AACCGGACCA
ATCGTTTACT ATGCCATAGC CATGGTATCG ATCTGTTGGG GATTATCGGC ATTTTATCGA
ATGCAAAACA GACGTATCAA GATGGGCAGC TCAATGCTTA AGGTTGACCA GAAGGCCTCA
TTTATCGACG GCATGCTTTC CGCTTCCACC GGTACGATCT TGGTGGTGAT TGGTTATGTT
CAACCCGGTA CTCAACTCGA TTTTCTGCTC TATATTGGCG ATGCCTTGTT AGTGATACTG
CTCGCTATTG CGATGCTTGG TCAGCCGTTC GGCATCATTA AAGACGCATT CATTGAATTG
GCGGGTGGCA AGTTACAGGA TGAAGTACAA CATCAAGTTA TCGAAGATAC GGTAAACCGC
CAACTCGAGC TGCGAGGAAT AACCTCAGAG GCGCTGAATA TAGGTAAGAC GGGGAGCAGT
TACCTGGTGA TTATCAGCCT GTCTTTTAGT AAGTTGGCAG GGCATAACAG CAGTGCCATC
ATGGGGTTTA AGGAATCACT GACAGCAGAG CTTGCAGGTG AACTCACCTT TGTCGATGTC
GAATTGGTGC TGATTTAA
|
|---|
| Protein sequence | MKDKIGSIER QSISIGIVAN LVMALSGWAT FYLSGSQALL LDGNMSFILF LSSIVALKIS
KIKTIRSEKF PFGLYVTEAL YSLMKGLLLL GVIISAITSN ASKIFQYLEG EPINMIKTGP
IVYYAIAMVS ICWGLSAFYR MQNRRIKMGS SMLKVDQKAS FIDGMLSAST GTILVVIGYV
QPGTQLDFLL YIGDALLVIL LAIAMLGQPF GIIKDAFIEL AGGKLQDEVQ HQVIEDTVNR
QLELRGITSE ALNIGKTGSS YLVIISLSFS KLAGHNSSAI MGFKESLTAE LAGELTFVDV
ELVLI
|
|---|
| |