Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2036 |
Symbol | |
ID | 5613771 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 2464419 |
End bp | 2466944 |
Gene Length | 2526 bp |
Protein Length | 841 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640932922 |
Product | TonB-dependent receptor |
Protein accession | YP_001473773 |
Protein GI | 157375173 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.519963 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAAGAA CATCGCAGCA TTCTCGTAGT AAATTAGCCT CAGCAATTAA ATTTGGTTTA ATTGCTTCAG TATCAACCAC AGCATTTACC GTATCAACAA GTGCGGTGGC AGAAGAAGCT AAAGTCGAAC GTATTGCAGT AACCGGCTCC CGTATTCAAC GACAAGATAT GGAAACAGCA TCTCCTGTAA CAGTGATTGA TGCTGCGACT ATCAAAGCTG AAGGTTTCAC TTCAGTAGAC CAAATGCTAC AAGCACAAAC TTCTATGGCT GGTGCCGCAA TGGGTTCAAG CACCAACAAT GGCTCAGACG GTGTTGCTCA GGTTGACCTT CGTGGTATGG GCTCGCAGCG TACGCTGGTA TTGTTAAATG GTCGCCGCAT GGTGAACTCA GGTTCTGGTG CTGACAGCGC TGTGGATCTG AACTCTATTC CTGTCGCTAT GATTGCACGT GTCGAGATCC TTAAAGACGG CGCTTCAGCG GTATATGGTT CAGACGCCAT TGCCGGTGTT GTAAACATTA TCACTAAGAA AGATTTTGAA GGCTTCCAGA TTGATGTTAC TGGTGGCATG ACTGATAAGA GCGACGGTGA AAACGGCGAA ATCAGTGCCC TTTACGGTTT TAATACTGAT ACGGGTAACT ACACATTCGG TGCGGCTTAC TCCGAGCGTC GTGGTGTGGT TCAGTCTGAC CGTGACTGGA CAGATCCTGG TGCCAGCTCA TTCATTCCAA ACGGGTCATT GGGCGGAATG GTTAAAGATG AGAATGGTAA CTGGGTTGAC CGTGAAGAAG GCTACGATTA TACACAAGAC AGCTTTTATC AAACGCCGAG TAAGCGTTAT AGCTTGTTCG CTAACATGAC GCAAGAACTT GGCGATGATC TGGTGCTAAC GGGTGATATC CTTTACACCA AGCGTAAGTC AAACCAGCAG TTGGCGCCAC AACCAGCTAA TCTCGACCTT GATGTTTGTG AAGCAGGTGA CGATCCTACT AAGTGTGTAG AGCTTGACCA AGATATGATC GATGCAGGCA TCACGCCAAA CGACAAAGGC CAAGTTAACT ACAGAAAACG CATGAGTGAC GTTGGTCCTC GTATCTATAC TCAGGACACT GATACATTAC GCGTCTCTGC AGGTCTAGCA GGTTCAATTG ATGTTAATAC CGGTATGGAT TGGGATCTTG CGTACACTTA CGGTAAAAAC AAAGCTAAAA CAGCGGTAGA AAACTCAATC AATGCATCAA TCATGACGGA TGCAATCTAT GCAGATCAAG ATCCTTGGTT GACAGGTCAG CCGATGACAG ACCAGGATTT GCTGAACAGT GTTGCTTACA CTGAAGAAGC TGATGGTGGT AATGAGCAAC ATGTATTCTC TGCGGGTCTA ACGGGTGAGT TATTTGACCT TGATGCCGGT GCTGTGGCAT ATGCAATCGG TGCTGAATAC CGTTACGAAA GCGGTTACTA CAACCCAGAC CCTATTGTGG TTGCGGGTGA AAGTACTGCT GCACAGCAAG ATCCAACAGA TGGTAACTAC AATGTAATTT CTGTATTCCA GGAAGTCAGC GTGCCATTTA CGGATAAGCT GACCGGTGAA TTCGCACTTC GTTTTGACGA TTACTCAACA TTTGGTAATG CGTCAACCTG GAAAATTGGT CTAACATACG AAGCGACAGA TGATTTGATG ATCCGCACCG TAGCAGCGAC GGGCTTCCGT GCTCCTAGCG TTAGCGAGCT ATACGGCGGA AACTCAGGTT CATTCGATTA CCTGGATGAT CCATGGGGTA ATGAGCAAGA CCCACAGATC TTAGTGATTC GTACCTCTGA TGAAGATCTT AAACCTGAAG AGTCTGAGTC ATATACTGCG GGCTTAGTGT ATTCGCCTAG CTATGTGGAT GGCATGTCGT TAACTGTAGA TTACTGGCGC TTTAAAGTTA AAAACGCGAT TGCTCGCATG GATACACAAA ATGGCCTAAA CAACTGTTTT GCAGGTGATC AGGCGGCATG TGAAGCGTTC AACATTGGAC CAAACGGCGA TCTAGATAAC CTAACAAACT CGCTAACTAA CGTAGGCTAC CAAGATACAA GCGGTATCGA TTTTAACTTA GCCTATAGCT TTGAAGCGTT GAGCTTAGAT TGGACAATAA GCAATGATAC CACCTATTTG CTGAACTTTG AGCAAGATGG CGTTGATTAC ACAAATACCA TCGATGGTAA TTTCGGTGCT TATGCTCAAG TTCGTAACAA CTTCAGCATT AAAGCGGGTC AAGATGATTG GAGCGTCATG TACTTCAACC GTTATATTGG TGAAATGGAT GACTTAGGTG AAGGTACTAA GGTTGATGCT ATTCTATATC ACAACGTATC AGCATCTTAT TACTTCAATG ATACTTGGAT GGTGAGTGCG GGCGTTAAGA ACCTGACTGA CGAAGAGCCA TCAAATGTGT CTAACGGTAG TGCCGGTGGT ACTGTACCAG AAGTGTATGA CACCATTGGT CGCCAATATT ACGCTGGCGT AACCGTCAAG TTCTAG
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Protein sequence | MIRTSQHSRS KLASAIKFGL IASVSTTAFT VSTSAVAEEA KVERIAVTGS RIQRQDMETA SPVTVIDAAT IKAEGFTSVD QMLQAQTSMA GAAMGSSTNN GSDGVAQVDL RGMGSQRTLV LLNGRRMVNS GSGADSAVDL NSIPVAMIAR VEILKDGASA VYGSDAIAGV VNIITKKDFE GFQIDVTGGM TDKSDGENGE ISALYGFNTD TGNYTFGAAY SERRGVVQSD RDWTDPGASS FIPNGSLGGM VKDENGNWVD REEGYDYTQD SFYQTPSKRY SLFANMTQEL GDDLVLTGDI LYTKRKSNQQ LAPQPANLDL DVCEAGDDPT KCVELDQDMI DAGITPNDKG QVNYRKRMSD VGPRIYTQDT DTLRVSAGLA GSIDVNTGMD WDLAYTYGKN KAKTAVENSI NASIMTDAIY ADQDPWLTGQ PMTDQDLLNS VAYTEEADGG NEQHVFSAGL TGELFDLDAG AVAYAIGAEY RYESGYYNPD PIVVAGESTA AQQDPTDGNY NVISVFQEVS VPFTDKLTGE FALRFDDYST FGNASTWKIG LTYEATDDLM IRTVAATGFR APSVSELYGG NSGSFDYLDD PWGNEQDPQI LVIRTSDEDL KPEESESYTA GLVYSPSYVD GMSLTVDYWR FKVKNAIARM DTQNGLNNCF AGDQAACEAF NIGPNGDLDN LTNSLTNVGY QDTSGIDFNL AYSFEALSLD WTISNDTTYL LNFEQDGVDY TNTIDGNFGA YAQVRNNFSI KAGQDDWSVM YFNRYIGEMD DLGEGTKVDA ILYHNVSASY YFNDTWMVSA GVKNLTDEEP SNVSNGSAGG TVPEVYDTIG RQYYAGVTVK F
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